Wall clock time and date at job start Mon Mar 30 2020 02:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.39994 * 125.93319 * 2 1 4 4 H 0.97004 * 125.66318 * 0.02562 * 3 2 1 5 5 C 1.34652 * 108.67779 * 179.85657 * 3 2 1 6 6 O 1.21786 * 125.86936 * 180.14940 * 5 3 2 7 7 C 1.41439 * 108.25849 * 0.40322 * 5 3 2 8 8 C 1.38526 * 125.92944 * 180.30626 * 2 1 3 9 9 C 1.40131 * 126.28625 * 359.95697 * 8 2 1 10 10 H 1.08002 * 120.00595 * 340.81837 * 9 8 2 11 11 C 1.40583 * 119.99696 * 160.82036 * 9 8 2 12 12 N 1.30446 * 119.99648 * 164.03199 * 11 9 8 13 13 Si 1.86801 * 119.99996 * 344.03494 * 11 9 8 14 14 H 1.48492 * 109.47214 * 91.63834 * 13 11 9 15 15 H 1.48500 * 109.46823 * 211.64188 * 13 11 9 16 16 H 1.48499 * 109.46874 * 331.63635 * 13 11 9 17 17 H 1.09000 * 109.47067 * 269.69127 * 1 2 3 18 18 H 1.09001 * 109.46479 * 29.69150 * 1 2 3 19 19 H 1.08996 * 109.46908 * 149.69542 * 1 2 3 20 20 H 1.08006 * 126.24729 * 179.72959 * 7 5 3 21 21 H 0.97006 * 119.99246 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2866 1.1335 0.0000 4 1 1.9803 2.0540 0.0004 5 6 3.5725 0.7341 0.0032 6 8 4.5467 1.4649 0.0067 7 6 3.5973 -0.6800 -0.0041 8 6 2.2779 -1.1217 -0.0060 9 6 1.8499 -2.4560 -0.0123 10 1 0.8440 -2.7020 0.2944 11 6 2.7300 -3.4745 -0.4178 12 7 2.4601 -4.7196 -0.1374 13 14 4.2858 -3.0449 -1.3581 14 1 5.4043 -2.8489 -0.4013 15 1 4.6209 -4.1501 -2.2918 16 1 4.0689 -1.7944 -2.1290 17 1 -0.3633 -0.0055 1.0277 18 1 -0.3632 0.8928 -0.5091 19 1 -0.3633 -0.8872 -0.5185 20 1 4.4794 -1.3033 -0.0079 21 1 3.0672 -5.4224 -0.4175 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107217441.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:14 Heat of formation + Delta-G solvation = 1.415243 kcal Electronic energy + Delta-G solvation = -9478.159713 eV Core-core repulsion = 7547.999398 eV Total energy + Delta-G solvation = -1930.160315 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 168.064 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.63251 -37.86258 -35.82182 -32.82394 -32.49763 -28.04678 -26.38881 -22.38071 -21.68298 -19.13854 -18.54547 -17.09724 -16.39401 -15.97078 -15.75873 -14.94303 -14.50752 -14.15490 -13.79356 -13.08550 -12.94337 -12.84775 -12.12646 -11.57493 -11.32103 -10.58694 -10.16207 -9.09859 -8.41928 -6.94164 0.93925 1.26420 1.37864 1.46743 1.59465 2.20483 2.47008 3.08225 3.38446 4.33031 4.61416 4.71920 4.81692 5.07155 5.19679 5.29343 5.63403 6.00029 6.15384 6.34467 6.88441 7.03631 7.78799 7.92999 Molecular weight = 168.06amu Principal moments of inertia in cm(-1) A = 0.049440 B = 0.023339 C = 0.016659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.202532 B = 1199.425132 C = 1680.392051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.430 5.430 3 N -0.532 5.532 4 H 0.431 0.569 5 C 0.523 3.477 6 O -0.655 6.655 7 C -0.562 4.562 8 C 0.328 3.672 9 C -0.444 4.444 10 H 0.101 0.899 11 C 0.087 3.913 12 N -0.796 5.796 13 Si 0.965 3.035 14 H -0.280 1.280 15 H -0.270 1.270 16 H -0.264 1.264 17 H 0.067 0.933 18 H 0.099 0.901 19 H 0.095 0.905 20 H 0.116 0.884 21 H 0.307 0.693 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.531 1.759 -1.772 6.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.027 4.027 2 N -0.233 5.233 3 N -0.279 5.279 4 H 0.277 0.723 5 C 0.329 3.671 6 O -0.547 6.547 7 C -0.589 4.589 8 C 0.216 3.784 9 C -0.477 4.477 10 H 0.119 0.881 11 C -0.139 4.139 12 N -0.419 5.419 13 Si 0.792 3.208 14 H -0.207 1.207 15 H -0.197 1.197 16 H -0.188 1.188 17 H 0.086 0.914 18 H 0.117 0.883 19 H 0.114 0.886 20 H 0.133 0.867 21 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.289 1.980 -1.755 6.823 hybrid contribution 0.618 0.429 -0.106 0.760 sum -5.670 2.409 -1.861 6.436 Atomic orbital electron populations 1.21985 0.72124 1.05288 1.03265 1.46666 1.03170 0.96017 1.77483 1.45199 1.03027 1.01891 1.77770 0.72299 1.16786 0.81077 0.90201 0.79066 1.90632 1.36980 1.63811 1.63324 1.21517 0.96244 0.94164 1.46976 1.18099 0.87801 0.86380 0.86134 1.18729 1.01969 0.86892 1.40143 0.88091 1.26312 1.00425 0.93883 0.93240 1.69387 1.37916 1.01722 1.32894 0.85496 0.78145 0.77968 0.79176 1.20685 1.19660 1.18835 0.91413 0.88282 0.88618 0.86668 0.88078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 3.05 11.25 127.77 1.44 4.49 14 2 N -0.43 -17.51 4.11 -360.53 -1.48 -18.99 14 3 N -0.53 -22.63 7.17 -180.30 -1.29 -23.92 14 4 H 0.43 14.59 8.96 -213.38 -1.91 12.68 14 5 C 0.52 28.25 8.30 85.05 0.71 28.95 14 6 O -0.66 -39.27 18.06 -4.62 -0.08 -39.35 14 7 C -0.56 -30.74 8.19 23.27 0.19 -30.55 14 8 C 0.33 16.09 6.30 38.76 0.24 16.33 14 9 C -0.44 -21.59 9.38 23.30 0.22 -21.38 14 10 H 0.10 4.76 7.80 -2.91 -0.02 4.73 14 11 C 0.09 4.19 5.51 85.47 0.47 4.66 14 12 N -0.80 -37.81 13.91 21.93 0.31 -37.50 14 13 Si 0.97 43.56 24.53 68.60 1.68 45.24 14 14 H -0.28 -13.23 6.70 99.48 0.67 -12.56 14 15 H -0.27 -10.88 7.11 99.48 0.71 -10.17 14 16 H -0.26 -12.99 6.56 99.48 0.65 -12.34 14 17 H 0.07 1.62 8.14 -2.39 -0.02 1.60 14 18 H 0.10 1.98 8.14 -2.39 -0.02 1.96 14 19 H 0.10 2.50 7.66 -2.39 -0.02 2.49 14 20 H 0.12 6.51 4.23 -2.91 -0.01 6.50 14 21 H 0.31 13.07 8.29 -92.70 -0.77 12.30 14 Total: -1.00 -66.49 190.30 1.65 -64.83 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -0.75 Total: 7.18 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: 3.27 Total: 2.51 kcal Atomic # 7 Polarization: -77.95 SS G_CDS: -2.47 Total: -80.42 kcal Atomic # 8 Polarization: -39.27 SS G_CDS: -0.08 Total: -39.35 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 1.68 Total: 45.24 kcal Total: -66.49 1.65 -64.83 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107217441.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.250 kcal (2) G-P(sol) polarization free energy of solvation -66.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds