Wall clock time and date at job start Mon Mar 30 2020 02:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40000 * 125.65951 * 2 1 4 4 H 0.97005 * 125.93170 * 0.03909 * 3 2 1 5 5 C 1.38519 * 108.13538 * 180.02562 * 3 2 1 6 6 C 1.40135 * 126.28729 * 180.02562 * 5 3 2 7 7 H 1.08004 * 120.00030 * 162.19137 * 6 5 3 8 8 C 1.40574 * 120.00209 * 342.19362 * 6 5 3 9 9 N 1.30441 * 120.00296 * 169.14281 * 8 6 5 10 10 Si 1.86803 * 119.99886 * 349.14082 * 8 6 5 11 11 H 1.48504 * 109.46924 * 86.47528 * 10 8 6 12 12 H 1.48500 * 109.46917 * 206.47898 * 10 8 6 13 13 H 1.48502 * 109.47052 * 326.47966 * 10 8 6 14 14 C 1.39139 * 107.42507 * 359.97438 * 5 3 2 15 15 C 1.34655 * 125.65840 * 180.37176 * 2 1 3 16 16 O 1.21781 * 125.87200 * 359.94766 * 15 2 1 17 17 H 1.08995 * 109.47590 * 89.99708 * 1 2 3 18 18 H 1.09005 * 109.47023 * 209.99895 * 1 2 3 19 19 H 1.08999 * 109.47070 * 329.99652 * 1 2 3 20 20 H 0.96997 * 120.00381 * 179.97438 * 9 8 6 21 21 H 1.08003 * 126.25139 * 180.02562 * 14 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2812 1.1375 0.0000 4 1 1.9748 2.0579 0.0005 5 6 3.6021 0.7204 -0.0006 6 6 4.7331 1.5478 -0.0003 7 1 5.6948 1.1478 0.2853 8 6 4.6159 2.8986 -0.3716 9 7 5.6105 3.7186 -0.1718 10 14 3.0359 3.5192 -1.1513 11 1 2.0780 3.9091 -0.0856 12 1 3.3345 4.6978 -2.0040 13 1 2.4393 2.4441 -1.9840 14 6 3.5997 -0.6710 -0.0004 15 6 2.2500 -1.0941 -0.0071 16 8 1.8642 -2.2491 -0.0137 17 1 -0.3634 0.0001 -1.0276 18 1 -0.3633 -0.8900 0.5138 19 1 -0.3633 0.8899 0.5139 20 1 5.5298 4.6505 -0.4283 21 1 4.4695 -1.3111 -0.0003 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107217445.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:48 Heat of formation + Delta-G solvation = 9.102411 kcal Electronic energy + Delta-G solvation = -9467.526336 eV Core-core repulsion = 7537.699361 eV Total energy + Delta-G solvation = -1929.826974 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 168.064 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -41.73308 -37.83228 -35.85805 -33.85429 -30.49162 -29.75277 -26.14667 -22.30391 -21.42005 -19.94827 -18.43277 -16.90628 -16.59070 -16.43305 -15.41309 -14.71441 -14.20245 -13.97734 -13.72146 -13.42717 -13.21815 -13.04634 -12.51863 -11.89997 -11.49099 -10.52042 -9.98743 -9.13395 -8.62423 -6.94449 0.83136 0.96680 1.11356 1.39039 1.47501 1.88901 2.43367 3.04984 3.25449 4.21237 4.47131 4.64436 4.70642 5.00297 5.08672 5.47288 5.60587 5.94888 6.04982 6.33410 6.78293 7.01024 7.70498 7.93936 Molecular weight = 168.06amu Principal moments of inertia in cm(-1) A = 0.069485 B = 0.019401 C = 0.015677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 402.868566 B = 1442.882759 C = 1785.644593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.447 5.447 3 N -0.533 5.533 4 H 0.423 0.577 5 C 0.327 3.673 6 C -0.450 4.450 7 H 0.092 0.908 8 C 0.054 3.946 9 N -0.802 5.802 10 Si 0.931 3.069 11 H -0.225 1.225 12 H -0.247 1.247 13 H -0.251 1.251 14 C -0.535 4.535 15 C 0.522 3.478 16 O -0.646 6.646 17 H 0.069 0.931 18 H 0.088 0.912 19 H 0.101 0.899 20 H 0.309 0.691 21 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.880 6.559 -1.325 10.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.269 5.269 3 N -0.270 5.270 4 H 0.275 0.725 5 C 0.215 3.785 6 C -0.483 4.483 7 H 0.110 0.890 8 C -0.168 4.168 9 N -0.425 5.425 10 Si 0.751 3.249 11 H -0.150 1.150 12 H -0.171 1.171 13 H -0.175 1.175 14 C -0.563 4.563 15 C 0.330 3.670 16 O -0.538 6.538 17 H 0.088 0.912 18 H 0.106 0.894 19 H 0.119 0.881 20 H 0.121 0.879 21 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.210 6.209 -1.317 10.377 hybrid contribution -0.105 0.578 -0.226 0.629 sum -8.315 6.786 -1.543 10.843 Atomic orbital electron populations 1.21941 0.73814 1.04934 1.03345 1.47784 1.04340 0.98775 1.76036 1.44928 1.01229 1.00228 1.80573 0.72501 1.18173 0.81507 0.92779 0.86019 1.19020 0.94218 0.93929 1.41173 0.88998 1.26936 1.01575 0.95527 0.92797 1.69404 1.33617 1.07070 1.32457 0.86077 0.77977 0.79793 0.81058 1.14955 1.17132 1.17511 1.21553 0.95707 0.93746 1.45307 1.16854 0.87914 0.82927 0.79331 1.90603 1.81532 1.18664 1.63008 0.91240 0.89371 0.88052 0.87899 0.86163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.09 11.34 127.77 1.45 4.54 14 2 N -0.45 -19.86 3.99 -494.03 -1.97 -21.83 14 3 N -0.53 -23.34 5.85 -51.18 -0.30 -23.64 14 4 H 0.42 15.71 4.30 -213.38 -0.92 14.80 14 5 C 0.33 16.51 6.26 38.76 0.24 16.75 14 6 C -0.45 -22.88 9.91 23.30 0.23 -22.64 14 7 H 0.09 5.03 8.06 -2.91 -0.02 5.01 14 8 C 0.05 2.45 5.53 85.47 0.47 2.92 14 9 N -0.80 -36.84 13.91 21.93 0.31 -36.54 14 10 Si 0.93 32.00 24.67 68.60 1.69 33.69 14 11 H -0.22 -6.52 6.81 99.48 0.68 -5.85 14 12 H -0.25 -7.76 7.11 99.48 0.71 -7.06 14 13 H -0.25 -9.23 6.74 99.48 0.67 -8.56 14 14 C -0.54 -29.46 10.92 23.28 0.25 -29.21 14 15 C 0.52 28.29 7.89 85.05 0.67 28.96 14 16 O -0.65 -38.02 17.82 -4.61 -0.08 -38.11 14 17 H 0.07 1.90 8.14 -2.39 -0.02 1.88 14 18 H 0.09 2.71 8.06 -2.38 -0.02 2.69 14 19 H 0.10 2.34 8.14 -2.39 -0.02 2.32 14 20 H 0.31 12.28 8.29 -92.71 -0.77 11.52 14 21 H 0.12 6.67 8.06 -2.91 -0.02 6.64 14 Total: -1.00 -64.92 191.81 3.23 -61.69 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: 0.26 Total: 23.40 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: 3.32 Total: 1.33 kcal Atomic # 7 Polarization: -80.04 SS G_CDS: -1.97 Total: -82.00 kcal Atomic # 8 Polarization: -38.02 SS G_CDS: -0.08 Total: -38.11 kcal Atomic # 14 Polarization: 32.00 SS G_CDS: 1.69 Total: 33.69 kcal Total: -64.92 3.23 -61.69 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107217445.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.794 kcal (2) G-P(sol) polarization free energy of solvation -64.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds