Wall clock time and date at job start Mon Mar 30 2020 02:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34480 * 126.52876 * 2 1 4 4 N 1.34465 * 108.40917 * 180.02562 * 3 2 1 5 5 C 1.31002 * 109.37972 * 359.71685 * 4 3 2 6 6 O 1.35453 * 125.81577 * 180.27187 * 5 4 3 7 7 N 1.36688 * 108.36272 * 0.45077 * 5 4 3 8 8 C 1.37557 * 126.54077 * 179.82590 * 7 5 4 9 9 H 1.08004 * 119.99569 * 216.02971 * 8 7 5 10 10 C 1.38881 * 120.00284 * 36.02758 * 8 7 5 11 11 N 1.31379 * 119.99740 * 202.89172 * 10 8 7 12 12 Si 1.86797 * 119.99870 * 22.89156 * 10 8 7 13 13 H 1.48498 * 109.47240 * 264.73291 * 12 10 8 14 14 H 1.48495 * 109.47154 * 24.73294 * 12 10 8 15 15 H 1.48504 * 109.46904 * 144.73124 * 12 10 8 16 16 H 1.09001 * 109.47280 * 269.97495 * 1 2 3 17 17 H 1.08999 * 109.47361 * 29.97920 * 1 2 3 18 18 H 1.09003 * 109.46949 * 149.97399 * 1 2 3 19 19 H 1.07996 * 125.79545 * 0.05086 * 3 2 1 20 20 H 0.96698 * 114.00181 * 271.73329 * 6 5 4 21 21 H 0.97006 * 119.99704 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3075 1.0806 0.0000 4 7 3.5855 0.6624 -0.0006 5 6 3.6143 -0.6473 0.0052 6 8 4.7298 -1.4155 0.0117 7 7 2.3268 -1.1063 -0.0006 8 6 1.9265 -2.4224 -0.0007 9 1 1.0484 -2.7196 -0.5548 10 6 2.6515 -3.3688 0.7116 11 7 2.5771 -4.6382 0.3814 12 14 3.7324 -2.8369 2.1392 13 1 5.1269 -2.6537 1.6628 14 1 3.2261 -1.5553 2.6927 15 1 3.7035 -3.8788 3.1970 16 1 -0.3634 -0.0004 1.0277 17 1 -0.3634 0.8901 -0.5135 18 1 -0.3633 -0.8898 -0.5143 19 1 1.9796 2.1096 0.0008 20 1 5.0714 -1.6204 -0.8694 21 1 3.0832 -5.2994 0.8791 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108263656.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:02 Heat of formation + Delta-G solvation = 17.533328 kcal Electronic energy + Delta-G solvation = -9689.280565 eV Core-core repulsion = 7759.819183 eV Total energy + Delta-G solvation = -1929.461383 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 168.064 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -40.77626 -36.21124 -33.86539 -31.65232 -30.34900 -25.15021 -24.83142 -20.79147 -19.38658 -18.41354 -16.71773 -15.20223 -14.82175 -13.85453 -13.39521 -13.25966 -12.63430 -12.31524 -11.82316 -11.48574 -11.18532 -10.92530 -10.42190 -9.99285 -9.40209 -8.81918 -8.45917 -7.05535 -6.84613 -4.60543 3.01621 3.13421 3.37061 3.42033 3.97042 4.12070 4.22452 4.76396 5.30169 6.00903 6.08998 6.30240 6.32436 6.56907 6.76309 7.20541 7.43546 7.72437 8.00514 8.32099 8.65906 9.17390 9.32504 10.19041 Molecular weight = 168.06amu Principal moments of inertia in cm(-1) A = 0.052352 B = 0.026060 C = 0.020661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.713748 B = 1074.198100 C = 1354.856172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C -0.067 4.067 3 C -0.048 4.048 4 N -0.511 5.511 5 C 0.280 3.720 6 O -0.434 6.434 7 N -0.272 5.272 8 C -0.367 4.367 9 H 0.118 0.882 10 C 0.089 3.911 11 N -0.830 5.830 12 Si 0.904 3.096 13 H -0.239 1.239 14 H -0.267 1.267 15 H -0.292 1.292 16 H 0.058 0.942 17 H 0.063 0.937 18 H 0.060 0.940 19 H 0.155 0.845 20 H 0.372 0.628 21 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.073 3.782 -0.157 3.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.188 4.188 3 C -0.201 4.201 4 N -0.241 5.241 5 C -0.013 4.013 6 O -0.235 6.235 7 N 0.049 4.951 8 C -0.494 4.494 9 H 0.135 0.865 10 C -0.126 4.126 11 N -0.459 5.459 12 Si 0.731 3.269 13 H -0.164 1.164 14 H -0.192 1.192 15 H -0.220 1.220 16 H 0.076 0.924 17 H 0.082 0.918 18 H 0.079 0.921 19 H 0.172 0.828 20 H 0.227 0.773 21 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.286 3.789 0.453 3.827 hybrid contribution -0.136 -0.656 0.133 0.683 sum -0.422 3.134 0.586 3.216 Atomic orbital electron populations 1.19916 0.88589 1.01628 1.01319 1.20962 0.93956 0.87223 1.16628 1.21432 0.88132 0.97461 1.13119 1.70147 1.22567 1.07543 1.23861 1.20126 0.80284 0.86022 1.14895 1.85231 1.37693 1.68444 1.32113 1.42185 1.04665 1.06130 1.42100 1.19330 1.16398 0.79171 1.34550 0.86481 1.25392 0.95415 0.94429 0.97327 1.69761 1.37497 1.01793 1.36831 0.86153 0.82706 0.78228 0.79844 1.16385 1.19157 1.21996 0.92351 0.91772 0.92108 0.82805 0.77297 0.90452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.03 10.15 36.01 0.37 -0.66 14 2 C -0.07 -1.55 6.92 -81.28 -0.56 -2.11 14 3 C -0.05 -1.10 11.76 -17.73 -0.21 -1.30 14 4 N -0.51 -12.96 11.28 -14.51 -0.16 -13.12 14 5 C 0.28 7.26 7.34 -88.43 -0.65 6.61 14 6 O -0.43 -10.35 9.07 -18.05 -0.16 -10.51 14 7 N -0.27 -7.12 2.52 -59.06 -0.15 -7.27 14 8 C -0.37 -10.00 10.00 -14.74 -0.15 -10.15 14 9 H 0.12 3.26 7.77 -52.48 -0.41 2.86 14 10 C 0.09 2.40 5.20 -17.51 -0.09 2.31 14 11 N -0.83 -22.60 13.95 55.49 0.77 -21.82 14 12 Si 0.90 22.62 24.82 -169.99 -4.22 18.40 14 13 H -0.24 -5.88 5.95 56.52 0.34 -5.54 14 14 H -0.27 -7.22 7.11 56.52 0.40 -6.82 14 15 H -0.29 -7.01 7.11 56.52 0.40 -6.61 14 16 H 0.06 1.00 8.14 -51.93 -0.42 0.58 14 17 H 0.06 0.95 8.14 -51.93 -0.42 0.53 14 18 H 0.06 1.12 7.69 -51.93 -0.40 0.72 14 19 H 0.15 2.86 8.06 -52.49 -0.42 2.44 14 20 H 0.37 7.07 9.06 45.56 0.41 7.48 14 21 H 0.29 7.16 8.31 -40.82 -0.34 6.82 14 LS Contribution 190.38 15.07 2.87 2.87 Total: -1.00 -31.09 190.38 -3.21 -34.30 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -0.86 Total: 2.46 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: -1.29 Total: -5.30 kcal Atomic # 7 Polarization: -42.68 SS G_CDS: 0.46 Total: -42.22 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: -0.16 Total: -10.51 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -4.22 Total: 18.40 kcal Total LS contribution 2.87 Total: 2.87 kcal Total: -31.09 -3.21 -34.30 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108263656.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.835 kcal (2) G-P(sol) polarization free energy of solvation -31.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds