Wall clock time and date at job start Mon Mar 30 2020 02:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00349 * 2 1 4 4 H 1.48502 * 109.47018 * 269.99898 * 3 2 1 5 5 H 1.48496 * 109.47039 * 29.99687 * 3 2 1 6 6 H 1.48502 * 109.47163 * 150.00003 * 3 2 1 7 7 C 1.37881 * 119.99687 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99855 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00176 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.47502 * 180.02562 * 9 7 2 11 11 C 1.36262 * 125.92213 * 124.99623 * 10 9 7 12 12 C 1.35879 * 105.96021 * 179.97438 * 11 10 9 13 13 N 1.40430 * 126.79354 * 180.02562 * 12 11 10 14 14 N 1.34015 * 106.42377 * 359.97438 * 12 11 10 15 15 N 1.28591 * 109.07581 * 0.02562 * 14 12 11 16 16 H 0.96998 * 119.99638 * 0.02562 * 1 2 3 17 17 H 1.09001 * 109.47449 * 59.99811 * 9 7 2 18 18 H 1.09005 * 109.47019 * 299.99784 * 9 7 2 19 19 H 1.08004 * 127.02143 * 359.97438 * 11 10 9 20 20 H 0.97000 * 119.99253 * 359.97438 * 13 12 11 21 21 H 0.96992 * 120.00252 * 180.02562 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2028 -3.6128 0.0018 11 6 2.2405 -4.6313 0.9062 12 6 3.2725 -5.4297 0.5270 13 7 3.6991 -6.6094 1.1581 14 7 3.8022 -4.8693 -0.5691 15 7 3.1480 -3.7990 -0.8519 16 1 -0.4849 0.8401 -0.0004 17 1 0.6246 -2.5571 -0.8897 18 1 0.6239 -2.5567 0.8904 19 1 1.5841 -4.7747 1.7518 20 1 3.2407 -6.9280 1.9514 21 1 4.4525 -7.1053 0.8013 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108280766.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:24 Heat of formation + Delta-G solvation = 69.749493 kcal Electronic energy + Delta-G solvation = -9136.888806 eV Core-core repulsion = 7241.984437 eV Total energy + Delta-G solvation = -1894.904369 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 168.071 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -43.78114 -36.49196 -35.18058 -33.88024 -30.27280 -29.34913 -25.78295 -22.95140 -22.34299 -18.87043 -18.24023 -17.11686 -16.91393 -16.55540 -16.26877 -14.84088 -14.45340 -14.08408 -13.10065 -12.79634 -12.51800 -12.34801 -12.18901 -11.74299 -11.57079 -10.80034 -10.56679 -8.68102 -8.38491 -6.52873 0.94304 1.39752 1.41535 1.51861 1.85166 1.92666 2.35267 2.90069 2.96702 4.00637 4.31374 4.37196 4.84050 5.02814 5.21512 5.54716 5.74338 5.93114 6.55469 6.57197 7.09275 7.17716 7.89798 8.70256 Molecular weight = 168.07amu Principal moments of inertia in cm(-1) A = 0.100152 B = 0.011786 C = 0.011205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 279.509149 B = 2375.166068 C = 2498.311140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.025 3.975 3 Si 0.973 3.027 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.557 4.557 8 H 0.054 0.946 9 C 0.255 3.745 10 N -0.254 5.254 11 C -0.131 4.131 12 C 0.239 3.761 13 N -0.833 5.833 14 N -0.362 5.362 15 N -0.108 5.108 16 H 0.275 0.725 17 H 0.040 0.960 18 H 0.069 0.931 19 H 0.213 0.787 20 H 0.421 0.579 21 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.076 -7.262 4.788 8.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.176 4.176 3 Si 0.797 3.203 4 H -0.198 1.198 5 H -0.194 1.194 6 H -0.198 1.198 7 C -0.596 4.596 8 H 0.072 0.928 9 C 0.136 3.864 10 N -0.052 5.052 11 C -0.286 4.286 12 C 0.002 3.998 13 N -0.388 5.388 14 N -0.232 5.232 15 N -0.087 5.087 16 H 0.084 0.916 17 H 0.058 0.942 18 H 0.087 0.913 19 H 0.230 0.770 20 H 0.253 0.747 21 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 2.551 -6.497 3.470 7.795 hybrid contribution -0.298 0.239 0.986 1.057 sum 2.253 -6.258 4.456 8.006 Atomic orbital electron populations 1.69971 1.07122 1.29077 1.49102 1.25681 0.95860 1.02621 0.93454 0.85328 0.78359 0.77986 0.78669 1.19764 1.19424 1.19777 1.21324 0.93447 0.90664 1.54130 0.92793 1.19754 0.86026 0.80804 0.99771 1.47810 1.21630 1.18760 1.17011 1.23316 1.07761 0.93766 1.03748 1.19151 0.94392 0.92671 0.93606 1.41020 1.40276 1.23451 1.34010 1.74877 1.25980 1.05784 1.16560 1.78095 1.00542 1.13110 1.16948 0.91558 0.94175 0.91284 0.77003 0.74701 0.76098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.15 13.29 21.45 0.28 -49.87 14 2 C 0.03 1.36 5.46 84.66 0.46 1.83 14 3 Si 0.97 42.73 29.54 68.60 2.03 44.75 14 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 14 5 H -0.27 -11.17 7.11 99.48 0.71 -10.46 14 6 H -0.27 -11.98 7.11 99.48 0.71 -11.28 14 7 C -0.56 -30.76 9.18 25.60 0.23 -30.52 14 8 H 0.05 3.12 7.81 -2.91 -0.02 3.09 14 9 C 0.26 12.76 6.22 85.63 0.53 13.30 14 10 N -0.25 -11.79 3.46 -350.23 -1.21 -13.00 14 11 C -0.13 -4.88 11.65 83.46 0.97 -3.90 14 12 C 0.24 8.69 8.49 131.32 1.12 9.80 14 13 N -0.83 -20.02 9.18 -55.58 -0.51 -20.53 14 14 N -0.36 -16.21 12.40 -55.60 -0.69 -16.90 14 15 N -0.11 -5.37 12.91 37.02 0.48 -4.90 14 16 H 0.28 14.09 8.31 -92.71 -0.77 13.32 14 17 H 0.04 2.12 8.14 -2.39 -0.02 2.10 14 18 H 0.07 3.30 8.07 -2.38 -0.02 3.29 14 19 H 0.21 5.98 8.06 -2.91 -0.02 5.95 14 20 H 0.42 7.07 8.96 -92.71 -0.83 6.24 14 21 H 0.41 8.59 8.96 -92.71 -0.83 7.76 14 Total: -1.00 -64.30 201.41 3.30 -61.00 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -0.40 Total: 8.94 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: 3.32 Total: -9.50 kcal Atomic # 7 Polarization: -103.55 SS G_CDS: -1.65 Total: -105.19 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.75 kcal Total: -64.30 3.30 -61.00 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108280766.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.749 kcal (2) G-P(sol) polarization free energy of solvation -64.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds