Wall clock time and date at job start Mon Mar 30 2020 01:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86794 * 120.00066 * 2 1 4 4 H 1.48502 * 109.47406 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47288 * 119.99951 * 3 2 1 6 6 H 1.48501 * 109.47385 * 239.99754 * 3 2 1 7 7 C 1.38813 * 119.99665 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00097 * 165.53182 * 7 2 1 9 9 N 1.36935 * 119.99901 * 345.53350 * 7 2 1 10 10 C 1.46508 * 119.99885 * 128.46267 * 9 7 2 11 11 C 1.52997 * 117.49681 * 8.62322 * 10 9 7 12 12 C 1.52999 * 117.49882 * 299.99993 * 10 9 7 13 13 C 1.46502 * 120.00182 * 308.46348 * 9 7 2 14 14 C 1.52991 * 117.49733 * 3.02381 * 13 9 7 15 15 C 1.52995 * 60.00120 * 252.51473 * 14 13 9 16 16 H 0.97003 * 120.00077 * 174.51694 * 1 2 3 17 17 H 1.09002 * 115.54787 * 154.32624 * 10 9 7 18 18 H 1.09003 * 117.50437 * 359.97438 * 11 10 9 19 19 H 1.09000 * 117.50038 * 145.02324 * 11 10 9 20 20 H 1.08996 * 117.50004 * 214.97834 * 12 10 9 21 21 H 1.08994 * 117.49933 * 359.97438 * 12 10 9 22 22 H 1.08998 * 115.54847 * 148.73561 * 13 9 7 23 23 H 1.09005 * 117.50050 * 0.02562 * 14 13 9 24 24 H 1.09002 * 117.50229 * 145.02436 * 14 13 9 25 25 H 1.09007 * 117.49908 * 252.51206 * 15 14 13 26 26 H 1.08995 * 117.50234 * 107.49536 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7465 -0.0006 5 1 3.1040 1.6964 1.2125 6 1 3.1040 1.6964 -1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0646 -1.2172 -0.2331 9 7 1.3580 -2.3691 0.2973 10 6 1.4668 -3.5188 -0.6043 11 6 2.4779 -3.4258 -1.7488 12 6 0.9790 -3.3370 -2.0430 13 6 0.5515 -2.4679 1.5163 14 6 0.4197 -1.2119 2.3799 15 6 1.2838 -2.3810 2.8568 16 1 -0.4850 -0.8362 -0.0803 17 1 1.3179 -4.4946 -0.1418 18 1 3.0619 -2.5091 -1.8313 19 1 2.9945 -4.3405 -2.0396 20 1 0.5096 -4.1932 -2.5273 21 1 0.5768 -2.3622 -2.3186 22 1 -0.3117 -3.1308 1.4564 23 1 0.9328 -0.3119 2.0409 24 1 -0.5304 -1.0481 2.8884 25 1 0.9022 -2.9864 3.6790 26 1 2.3656 -2.2502 2.8318 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113059900.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:26 Heat of formation + Delta-G solvation = 56.103090 kcal Electronic energy + Delta-G solvation = -9828.788486 eV Core-core repulsion = 8102.258619 eV Total energy + Delta-G solvation = -1726.529867 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 167.101 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.44597 -37.07603 -34.19502 -31.34522 -26.37841 -23.13626 -22.89296 -22.44165 -21.60921 -18.67095 -17.55118 -16.08133 -15.71034 -15.48875 -15.21614 -14.15870 -13.40787 -13.06436 -12.76418 -12.24920 -12.03211 -11.99867 -11.82866 -11.52946 -11.13577 -10.89722 -10.78248 -10.18457 -8.69402 -7.89678 -5.71613 1.54366 1.59916 1.79005 2.56220 3.14261 3.21353 3.27956 3.53634 4.22197 4.27190 4.38847 4.41388 4.50060 4.57332 4.86210 4.90203 4.93960 5.08333 5.27696 5.40353 5.49199 5.67585 6.02515 6.48736 7.22558 7.74108 8.24751 8.98229 Molecular weight = 167.10amu Principal moments of inertia in cm(-1) A = 0.038687 B = 0.025160 C = 0.018118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.584914 B = 1112.602893 C = 1545.080808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.040 4.040 3 Si 1.103 2.897 4 H -0.286 1.286 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.364 4.364 8 H 0.030 0.970 9 N -0.554 5.554 10 C 0.101 3.899 11 C -0.181 4.181 12 C -0.213 4.213 13 C 0.106 3.894 14 C -0.176 4.176 15 C -0.205 4.205 16 H 0.260 0.740 17 H 0.115 0.885 18 H 0.070 0.930 19 H 0.112 0.888 20 H 0.105 0.895 21 H 0.050 0.950 22 H 0.095 0.905 23 H 0.088 0.912 24 H 0.081 0.919 25 H 0.103 0.897 26 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.220 -4.674 1.157 5.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.241 4.241 3 Si 0.927 3.073 4 H -0.212 1.212 5 H -0.202 1.202 6 H -0.204 1.204 7 C -0.494 4.494 8 H 0.047 0.953 9 N -0.270 5.270 10 C -0.006 4.006 11 C -0.219 4.219 12 C -0.254 4.254 13 C -0.001 4.001 14 C -0.215 4.215 15 C -0.246 4.246 16 H 0.070 0.930 17 H 0.132 0.868 18 H 0.089 0.911 19 H 0.130 0.870 20 H 0.123 0.877 21 H 0.069 0.931 22 H 0.113 0.887 23 H 0.106 0.894 24 H 0.099 0.901 25 H 0.122 0.878 26 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.037 -3.019 1.220 3.841 hybrid contribution 0.082 -1.412 -0.266 1.439 sum 2.118 -4.431 0.954 5.003 Atomic orbital electron populations 1.70841 1.07196 1.30194 1.46850 1.27260 0.96951 1.04688 0.95241 0.83047 0.74218 0.72597 0.77410 1.21189 1.20241 1.20390 1.19617 0.92056 0.86903 1.50825 0.95251 1.43104 1.55486 1.09948 1.18511 1.21545 1.02449 0.91463 0.85159 1.23020 0.92100 1.02332 1.04443 1.23210 0.97225 1.00936 1.04018 1.21148 0.95458 0.99980 0.83525 1.23145 1.00480 0.94255 1.03596 1.23370 0.97902 1.03335 0.99985 0.92999 0.86756 0.91149 0.86953 0.87652 0.93096 0.88749 0.89370 0.90086 0.87848 0.91250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.84 11.90 21.65 0.26 -53.58 15 2 C -0.04 -2.23 3.13 84.86 0.27 -1.96 15 3 Si 1.10 50.47 29.80 68.60 2.04 52.51 15 4 H -0.29 -13.18 7.11 99.48 0.71 -12.47 15 5 H -0.28 -11.99 7.11 99.48 0.71 -11.28 15 6 H -0.28 -12.07 7.11 99.48 0.71 -11.37 15 7 C -0.36 -20.17 7.58 84.03 0.64 -19.54 15 8 H 0.03 1.71 7.13 -2.91 -0.02 1.69 15 9 N -0.55 -27.98 2.67 -654.26 -1.75 -29.73 15 10 C 0.10 4.37 6.63 44.99 0.30 4.67 15 11 C -0.18 -7.20 9.84 30.59 0.30 -6.89 15 12 C -0.21 -8.80 10.27 30.59 0.31 -8.48 15 13 C 0.11 4.93 5.51 44.99 0.25 5.18 15 14 C -0.18 -8.29 8.23 30.59 0.25 -8.04 15 15 C -0.21 -8.50 10.36 30.59 0.32 -8.18 15 16 H 0.26 15.77 7.07 -92.71 -0.66 15.12 15 17 H 0.11 4.27 8.14 -2.39 -0.02 4.25 15 18 H 0.07 3.20 6.67 -2.39 -0.02 3.18 15 19 H 0.11 3.59 8.14 -2.39 -0.02 3.57 15 20 H 0.11 3.57 8.14 -2.39 -0.02 3.55 15 21 H 0.05 2.50 8.14 -2.39 -0.02 2.48 15 22 H 0.09 4.06 8.14 -2.39 -0.02 4.04 15 23 H 0.09 4.74 4.95 -2.38 -0.01 4.73 15 24 H 0.08 3.52 8.14 -2.39 -0.02 3.50 15 25 H 0.10 3.53 8.14 -2.38 -0.02 3.51 15 26 H 0.07 3.06 8.14 -2.39 -0.02 3.04 15 Total: -1.00 -60.97 218.20 4.45 -56.52 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: 1.26 Total: 17.52 kcal Atomic # 6 Polarization: -45.88 SS G_CDS: 2.63 Total: -43.24 kcal Atomic # 7 Polarization: -81.82 SS G_CDS: -1.49 Total: -83.31 kcal Atomic # 14 Polarization: 50.47 SS G_CDS: 2.04 Total: 52.51 kcal Total: -60.97 4.45 -56.52 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113059900.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.626 kcal (2) G-P(sol) polarization free energy of solvation -60.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds