Wall clock time and date at job start Mon Mar 30 2020 02:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47337 * 2 1 4 4 C 1.50700 * 109.47366 * 239.99356 * 2 1 3 5 5 H 1.07995 * 120.00469 * 274.99248 * 4 2 1 6 6 C 1.37881 * 119.99708 * 94.99359 * 4 2 1 7 7 N 1.31510 * 119.99873 * 184.89807 * 6 4 2 8 8 Si 1.86798 * 119.99949 * 4.89611 * 6 4 2 9 9 H 1.48495 * 109.47233 * 84.80314 * 8 6 4 10 10 H 1.48507 * 109.46873 * 204.80589 * 8 6 4 11 11 H 1.48497 * 109.47123 * 324.80089 * 8 6 4 12 12 N 1.46905 * 109.47303 * 119.99505 * 2 1 3 13 13 C 1.48228 * 111.00285 * 181.36413 * 12 2 1 14 14 C 1.51117 * 105.35857 * 144.89899 * 13 12 2 15 15 C 1.30961 * 109.45825 * 343.02132 * 14 13 12 16 16 C 1.48233 * 110.99923 * 295.00281 * 12 2 1 17 17 H 1.09003 * 109.46920 * 175.15764 * 1 2 3 18 18 H 1.08998 * 109.47146 * 295.15272 * 1 2 3 19 19 H 1.08991 * 109.47145 * 55.15826 * 1 2 3 20 20 H 0.97006 * 120.00315 * 179.97438 * 7 6 4 21 21 H 1.09001 * 110.26683 * 263.87201 * 13 12 2 22 22 H 1.09003 * 110.26481 * 25.92691 * 13 12 2 23 23 H 1.08005 * 125.26711 * 163.05412 * 14 13 12 24 24 H 1.08000 * 125.27071 * 179.97438 * 15 14 13 25 25 H 1.08999 * 110.26468 * 334.07326 * 16 12 2 26 26 H 1.08998 * 110.26766 * 96.12649 * 16 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.1357 -1.7855 -1.2288 6 6 2.3602 0.0119 -2.3581 7 7 2.7062 -0.6134 -3.4620 8 14 2.3127 1.8789 -2.3178 9 1 3.5976 2.3953 -1.7818 10 1 2.1055 2.3985 -3.6934 11 1 1.1970 2.3269 -1.4462 12 7 2.0197 -0.6924 1.1995 13 6 3.5011 -0.6837 1.2504 14 6 3.8506 -0.5638 2.7157 15 6 2.8014 -0.1512 3.3821 16 6 1.6453 0.0460 2.4291 17 1 -0.3633 -1.0240 -0.0868 18 1 -0.3633 0.4368 0.9302 19 1 -0.3633 0.5871 -0.8434 20 1 2.9365 -0.1052 -4.2556 21 1 3.8983 -1.6131 0.8423 22 1 3.8928 0.1702 0.6976 23 1 4.8162 -0.7838 3.1465 24 1 2.7675 0.0210 4.4477 25 1 1.5144 1.1053 2.2083 26 1 0.7308 -0.3676 2.8542 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000118879181.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:39 Heat of formation + Delta-G solvation = 31.256253 kcal Electronic energy + Delta-G solvation = -9659.384535 eV Core-core repulsion = 7931.777228 eV Total energy + Delta-G solvation = -1727.607306 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 167.101 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.70520 -33.87843 -31.65053 -28.31920 -27.77648 -24.97890 -21.91084 -19.36481 -18.68475 -16.93753 -15.78996 -14.63219 -13.82218 -13.35599 -12.68261 -12.49933 -12.15092 -11.80576 -11.48226 -11.02624 -10.73489 -10.68566 -10.52854 -10.24794 -9.76090 -9.18912 -8.78499 -8.56014 -7.36014 -6.09732 -4.08740 2.60400 3.23902 3.33112 3.34445 4.37887 4.91360 5.21328 5.33219 5.36877 5.96280 6.02797 6.13117 6.34158 6.44814 6.47206 6.59871 6.73820 6.83786 6.85860 7.20213 7.28945 7.57794 7.92610 7.98532 8.63609 9.01528 9.53665 11.03465 Molecular weight = 167.10amu Principal moments of inertia in cm(-1) A = 0.058438 B = 0.017312 C = 0.016501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.026947 B = 1617.023197 C = 1696.472091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.167 3.833 3 H 0.004 0.996 4 C -0.502 4.502 5 H 0.081 0.919 6 C 0.072 3.928 7 N -0.897 5.897 8 Si 0.871 3.129 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.266 1.266 12 N -0.493 5.493 13 C 0.070 3.930 14 C -0.167 4.167 15 C -0.184 4.184 16 C 0.049 3.951 17 H 0.055 0.945 18 H 0.023 0.977 19 H 0.046 0.954 20 H 0.264 0.736 21 H 0.083 0.917 22 H 0.054 0.946 23 H 0.125 0.875 24 H 0.123 0.877 25 H 0.044 0.956 26 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.035 3.318 9.610 10.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.060 3.940 3 H 0.021 0.979 4 C -0.541 4.541 5 H 0.099 0.901 6 C -0.130 4.130 7 N -0.535 5.535 8 Si 0.698 3.302 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.191 1.191 12 N -0.218 5.218 13 C -0.058 4.058 14 C -0.186 4.186 15 C -0.202 4.202 16 C -0.079 4.079 17 H 0.074 0.926 18 H 0.042 0.958 19 H 0.065 0.935 20 H 0.074 0.926 21 H 0.101 0.899 22 H 0.072 0.928 23 H 0.143 0.857 24 H 0.141 0.859 25 H 0.062 0.938 26 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.234 2.796 9.348 9.760 hybrid contribution 0.389 1.895 -0.087 1.936 sum 0.155 4.691 9.260 10.382 Atomic orbital electron populations 1.21905 0.97615 1.01154 0.98252 1.20024 0.92653 0.92117 0.89206 0.97853 1.20890 1.43132 0.95957 0.94084 0.90101 1.25001 0.94677 0.97921 0.95403 1.69889 1.46308 1.35641 1.01631 0.86964 0.78984 0.86951 0.77285 1.20305 1.21278 1.19122 1.65761 1.07105 1.47360 1.01535 1.21787 0.90037 1.02014 0.91925 1.23798 0.98414 0.99445 0.96944 1.23544 0.96098 1.01812 0.98742 1.22071 0.97308 0.96855 0.91697 0.92603 0.95832 0.93534 0.92585 0.89919 0.92795 0.85676 0.85868 0.93810 0.90821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 9.24 37.16 0.34 -2.56 15 2 C 0.17 4.08 1.27 -68.86 -0.09 3.99 15 3 H 0.00 0.10 5.04 -51.93 -0.26 -0.17 15 4 C -0.50 -14.21 8.29 -34.44 -0.29 -14.49 15 5 H 0.08 2.53 8.06 -52.49 -0.42 2.11 15 6 C 0.07 2.07 5.47 -17.82 -0.10 1.98 15 7 N -0.90 -27.32 13.96 55.43 0.77 -26.54 15 8 Si 0.87 21.58 26.99 -169.99 -4.59 16.99 15 9 H -0.28 -6.77 7.11 56.52 0.40 -6.37 15 10 H -0.29 -7.03 7.11 56.52 0.40 -6.63 15 11 H -0.27 -6.37 6.82 56.52 0.39 -5.98 15 12 N -0.49 -10.93 5.37 -228.09 -1.22 -12.15 15 13 C 0.07 1.45 5.85 -4.04 -0.02 1.43 15 14 C -0.17 -2.78 10.95 -35.81 -0.39 -3.18 15 15 C -0.18 -2.93 10.94 -35.81 -0.39 -3.32 15 16 C 0.05 0.90 5.44 -4.04 -0.02 0.87 15 17 H 0.05 1.24 8.14 -51.93 -0.42 0.82 15 18 H 0.02 0.45 7.20 -51.93 -0.37 0.07 15 19 H 0.05 1.03 8.14 -51.93 -0.42 0.61 15 20 H 0.26 7.55 8.31 -40.82 -0.34 7.21 15 21 H 0.08 1.76 8.14 -51.93 -0.42 1.34 15 22 H 0.05 1.19 7.73 -51.93 -0.40 0.79 15 23 H 0.13 1.70 8.06 -52.48 -0.42 1.28 15 24 H 0.12 1.57 8.06 -52.49 -0.42 1.15 15 25 H 0.04 0.81 7.68 -51.93 -0.40 0.41 15 26 H 0.07 1.26 8.13 -51.93 -0.42 0.84 15 LS Contribution 217.49 15.07 3.28 3.28 Total: -1.00 -29.95 217.49 -6.26 -36.22 By element: Atomic # 1 Polarization: 1.03 SS G_CDS: -3.55 Total: -2.52 kcal Atomic # 6 Polarization: -14.32 SS G_CDS: -0.96 Total: -15.28 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: -0.45 Total: -38.69 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.59 Total: 16.99 kcal Total LS contribution 3.28 Total: 3.28 kcal Total: -29.95 -6.26 -36.22 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118879181.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.474 kcal (2) G-P(sol) polarization free energy of solvation -29.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds