Wall clock time and date at job start Mon Mar 30 2020 01:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48496 * 109.46683 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47426 * 300.00172 * 3 2 1 6 6 H 1.48501 * 109.46833 * 60.00415 * 3 2 1 7 7 C 1.37871 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00205 * 179.72412 * 7 2 1 9 9 C 1.50706 * 120.00436 * 359.97438 * 7 2 1 10 10 N 1.46895 * 109.47182 * 179.72677 * 9 7 2 11 11 C 1.46901 * 110.99816 * 179.97438 * 10 9 7 12 12 C 1.54631 * 111.04114 * 267.02249 * 11 10 9 13 13 C 1.51104 * 104.72853 * 217.33591 * 12 11 10 14 14 C 1.30525 * 111.10297 * 16.43416 * 13 12 11 15 15 C 1.51105 * 111.10702 * 0.02562 * 14 13 12 16 16 H 0.97004 * 120.00247 * 359.97438 * 1 2 3 17 17 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 18 18 H 1.08998 * 109.47012 * 59.72028 * 9 7 2 19 19 H 1.00902 * 111.00178 * 56.04567 * 10 9 7 20 20 H 1.08996 * 110.91416 * 31.03666 * 11 10 9 21 21 H 1.09005 * 110.38454 * 336.15099 * 12 11 10 22 22 H 1.09000 * 110.38838 * 98.52071 * 12 11 10 23 23 H 1.07999 * 124.44422 * 196.45943 * 13 12 11 24 24 H 1.07994 * 124.44802 * 180.02562 * 14 13 12 25 25 H 1.08993 * 110.39064 * 224.75400 * 15 14 13 26 26 H 1.08997 * 110.48388 * 102.41548 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0050 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6157 -0.0078 11 6 1.5052 -4.9070 -0.0073 12 6 1.3134 -5.4341 1.4336 13 6 1.5055 -6.9290 1.3247 14 6 2.0912 -7.2469 0.2024 15 6 2.3879 -6.0172 -0.6240 16 1 -0.4851 0.8401 0.0004 17 1 0.6283 -2.5592 0.8921 18 1 0.6202 -2.5546 -0.8878 19 1 2.8439 -3.5507 0.7709 20 1 0.5503 -4.8319 -0.5275 21 1 2.0616 -5.0026 2.0985 22 1 0.3094 -5.2054 1.7912 23 1 1.1981 -7.6408 2.0765 24 1 2.3321 -8.2564 -0.0964 25 1 2.1142 -6.1845 -1.6657 26 1 3.4422 -5.7512 -0.5471 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132907236.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:58 Heat of formation + Delta-G solvation = -10.314399 kcal Electronic energy + Delta-G solvation = -9183.451605 eV Core-core repulsion = 7454.041659 eV Total energy + Delta-G solvation = -1729.409945 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 167.101 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.79143 -36.03640 -34.08794 -29.66896 -29.02729 -27.02324 -23.73163 -21.51991 -19.57388 -18.55014 -17.11169 -16.69610 -16.07694 -15.41767 -14.48906 -13.78862 -13.67245 -13.48816 -12.98513 -12.85765 -12.56735 -12.36759 -12.25884 -12.01466 -11.94340 -11.24588 -10.68618 -9.77079 -9.08442 -8.23989 -6.35783 1.40429 1.41016 1.41900 1.56090 2.39597 3.09306 3.49521 3.83605 3.91573 4.19689 4.42555 4.65036 4.82303 4.83612 5.01088 5.06799 5.13408 5.19229 5.27840 5.60146 5.63675 6.01032 6.07935 6.44915 6.71324 6.87973 7.35645 8.88039 Molecular weight = 167.10amu Principal moments of inertia in cm(-1) A = 0.114570 B = 0.009754 C = 0.009488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 244.332974 B = 2869.856206 C = 2950.300113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.976 3.024 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.276 1.276 7 C -0.538 4.538 8 H 0.065 0.935 9 C 0.209 3.791 10 N -0.679 5.679 11 C 0.071 3.929 12 C -0.129 4.129 13 C -0.171 4.171 14 C -0.158 4.158 15 C -0.089 4.089 16 H 0.266 0.734 17 H -0.038 1.038 18 H -0.003 1.003 19 H 0.336 0.664 20 H 0.060 0.940 21 H 0.071 0.929 22 H 0.056 0.944 23 H 0.144 0.856 24 H 0.152 0.848 25 H 0.072 0.928 26 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.975 -10.577 1.793 11.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.800 3.200 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.576 4.576 8 H 0.083 0.917 9 C 0.081 3.919 10 N -0.309 5.309 11 C -0.040 4.040 12 C -0.168 4.168 13 C -0.189 4.189 14 C -0.176 4.176 15 C -0.127 4.127 16 H 0.074 0.926 17 H -0.020 1.020 18 H 0.015 0.985 19 H 0.154 0.846 20 H 0.079 0.921 21 H 0.089 0.911 22 H 0.074 0.926 23 H 0.162 0.838 24 H 0.169 0.831 25 H 0.091 0.909 26 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.913 -10.427 1.091 11.190 hybrid contribution -0.438 0.956 0.907 1.389 sum 3.475 -9.471 1.998 10.284 Atomic orbital electron populations 1.70104 1.07894 1.28020 1.51531 1.25989 0.95807 1.03522 0.94458 0.85232 0.78908 0.78040 0.77790 1.18579 1.20330 1.20205 1.21601 0.93867 0.91461 1.50667 0.91685 1.19219 0.90674 0.88935 0.93061 1.60577 1.19732 1.01171 1.49396 1.22545 0.96534 0.89801 0.95101 1.22094 1.01287 0.95570 0.97871 1.23293 1.01078 0.95336 0.99194 1.23477 0.99174 0.99070 0.95914 1.21354 1.00168 0.91856 0.99314 0.92562 1.02029 0.98485 0.84598 0.92116 0.91079 0.92573 0.83826 0.83062 0.90947 0.90231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.47 13.29 21.45 0.28 -57.18 15 2 C 0.00 0.02 5.46 84.65 0.46 0.48 15 3 Si 0.98 44.79 29.54 68.60 2.03 46.82 15 4 H -0.26 -11.49 7.11 99.48 0.71 -10.79 15 5 H -0.28 -12.41 7.11 99.48 0.71 -11.70 15 6 H -0.28 -12.25 7.11 99.48 0.71 -11.55 15 7 C -0.54 -31.42 9.32 25.60 0.24 -31.18 15 8 H 0.06 3.68 7.81 -2.91 -0.02 3.66 15 9 C 0.21 11.58 5.30 85.56 0.45 12.04 15 10 N -0.68 -30.46 6.36 -489.80 -3.11 -33.58 15 11 C 0.07 2.66 3.50 46.04 0.16 2.82 15 12 C -0.13 -4.20 6.51 30.53 0.20 -4.00 15 13 C -0.17 -4.34 10.78 26.26 0.28 -4.06 15 14 C -0.16 -3.82 10.77 26.26 0.28 -3.54 15 15 C -0.09 -2.66 6.55 30.54 0.20 -2.46 15 16 H 0.27 15.20 8.31 -92.71 -0.77 14.43 15 17 H -0.04 -2.25 8.14 -2.39 -0.02 -2.27 15 18 H 0.00 -0.18 8.09 -2.39 -0.02 -0.20 15 19 H 0.34 14.28 8.07 -89.69 -0.72 13.55 15 20 H 0.06 2.47 7.83 -2.39 -0.02 2.45 15 21 H 0.07 2.32 7.56 -2.38 -0.02 2.30 15 22 H 0.06 1.89 8.14 -2.39 -0.02 1.87 15 23 H 0.14 2.87 8.06 -2.91 -0.02 2.85 15 24 H 0.15 2.70 8.06 -2.91 -0.02 2.67 15 25 H 0.07 2.06 8.14 -2.39 -0.02 2.04 15 26 H 0.08 2.39 8.08 -2.39 -0.02 2.37 15 Total: -1.00 -64.05 224.96 1.90 -62.15 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: 0.42 Total: 11.70 kcal Atomic # 6 Polarization: -32.19 SS G_CDS: 2.28 Total: -29.91 kcal Atomic # 7 Polarization: -87.93 SS G_CDS: -2.83 Total: -90.76 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -64.05 1.90 -62.15 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132907236.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.838 kcal (2) G-P(sol) polarization free energy of solvation -64.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds