Wall clock time and date at job start Mon Mar 30 2020 02:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48503 * 109.47311 * 274.90270 * 3 2 1 5 5 H 1.48500 * 109.47218 * 34.90179 * 3 2 1 6 6 H 1.48498 * 109.47318 * 154.90394 * 3 2 1 7 7 C 1.37880 * 119.99770 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00054 * 170.09893 * 7 2 1 9 9 C 1.50700 * 120.00320 * 350.09466 * 7 2 1 10 10 C 1.52079 * 114.85191 * 326.78379 * 9 7 2 11 11 C 1.52863 * 110.52581 * 192.63741 * 10 9 7 12 12 C 1.53285 * 108.62669 * 55.02794 * 11 10 9 13 13 C 1.52879 * 108.60924 * 285.70340 * 12 11 10 14 14 C 1.51587 * 109.94874 * 54.35729 * 13 12 11 15 15 H 1.09009 * 114.66348 * 129.16190 * 14 13 12 16 16 O 1.42108 * 116.29381 * 114.50495 * 9 7 2 17 17 H 0.96993 * 119.99428 * 0.02562 * 1 2 3 18 18 H 1.09004 * 109.26866 * 312.91107 * 10 9 7 19 19 H 1.09007 * 109.26455 * 72.36578 * 10 9 7 20 20 H 1.08997 * 109.61242 * 174.77366 * 11 10 9 21 21 H 1.09004 * 109.60921 * 295.11347 * 11 10 9 22 22 H 1.08997 * 109.61664 * 45.44571 * 12 11 10 23 23 H 1.09001 * 109.61334 * 165.97286 * 12 11 10 24 24 H 1.09003 * 109.35910 * 174.77581 * 13 12 11 25 25 H 1.09003 * 109.36172 * 294.50226 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3931 2.1062 -1.3950 5 1 1.5023 2.6205 0.8011 6 1 3.5947 1.4124 0.5938 7 6 2.0045 -1.1941 -0.0005 8 1 3.0725 -1.2010 -0.1614 9 6 1.2679 -2.4896 0.2234 10 6 0.0757 -2.3929 1.1626 11 6 -0.4033 -3.7873 1.5661 12 6 0.7800 -4.5578 2.1628 13 6 1.7156 -4.9713 1.0267 14 6 2.1120 -3.7545 0.2142 15 1 3.1848 -3.6424 0.0568 16 8 1.2417 -3.3961 -0.8707 17 1 -0.4849 0.8400 -0.0004 18 1 0.3655 -1.8396 2.0560 19 1 -0.7355 -1.8651 0.6609 20 1 -1.1959 -3.7011 2.3093 21 1 -0.7802 -4.3128 0.6886 22 1 1.3163 -3.9188 2.8643 23 1 0.4154 -5.4463 2.6783 24 1 2.6071 -5.4387 1.4448 25 1 1.2045 -5.6834 0.3787 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000137625825.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:13 Heat of formation + Delta-G solvation = -48.075393 kcal Electronic energy + Delta-G solvation = -9908.231427 eV Core-core repulsion = 8079.465380 eV Total energy + Delta-G solvation = -1828.766047 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 168.089 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.46812 -35.84941 -35.00324 -31.37280 -29.01545 -26.63106 -23.19197 -23.03461 -19.76158 -18.96611 -16.89880 -16.39895 -15.87995 -15.33607 -14.84658 -14.30186 -14.01142 -13.56681 -13.02286 -12.88008 -12.67483 -12.55152 -12.00047 -11.64477 -11.45119 -11.10171 -10.84296 -10.46775 -10.06536 -8.20729 -6.48654 1.39842 1.40676 1.54167 2.33906 2.82936 3.32139 3.88067 4.09339 4.17081 4.27994 4.40317 4.67955 4.76084 4.83286 4.97722 5.10013 5.22530 5.28423 5.36542 5.53025 5.60409 5.72015 5.98009 6.13067 6.62237 7.23702 8.75840 Molecular weight = 168.09amu Principal moments of inertia in cm(-1) A = 0.074096 B = 0.016752 C = 0.015445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 377.795939 B = 1671.068034 C = 1812.396883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.030 3.970 3 Si 0.974 3.026 4 H -0.277 1.277 5 H -0.269 1.269 6 H -0.262 1.262 7 C -0.554 4.554 8 H 0.059 0.941 9 C 0.166 3.834 10 C -0.071 4.071 11 C -0.124 4.124 12 C -0.110 4.110 13 C -0.094 4.094 14 C -0.056 4.056 15 H 0.091 0.909 16 O -0.436 6.436 17 H 0.270 0.730 18 H 0.056 0.944 19 H 0.069 0.931 20 H 0.078 0.922 21 H 0.041 0.959 22 H 0.067 0.933 23 H 0.091 0.909 24 H 0.098 0.902 25 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.540 -4.474 5.872 7.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.173 4.173 3 Si 0.797 3.203 4 H -0.203 1.203 5 H -0.194 1.194 6 H -0.186 1.186 7 C -0.591 4.591 8 H 0.078 0.922 9 C 0.130 3.870 10 C -0.109 4.109 11 C -0.161 4.161 12 C -0.148 4.148 13 C -0.131 4.131 14 C -0.113 4.113 15 H 0.109 0.891 16 O -0.359 6.359 17 H 0.079 0.921 18 H 0.074 0.926 19 H 0.088 0.912 20 H 0.096 0.904 21 H 0.060 0.940 22 H 0.086 0.914 23 H 0.110 0.890 24 H 0.116 0.884 25 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.243 -4.454 5.557 7.230 hybrid contribution 0.306 0.888 -0.753 1.204 sum 1.549 -3.566 4.804 6.180 Atomic orbital electron populations 1.70129 1.07494 1.28125 1.47629 1.25961 0.95864 1.03167 0.92335 0.85322 0.78991 0.77683 0.78338 1.20307 1.19370 1.18566 1.21230 0.94179 0.90936 1.52750 0.92249 1.20437 0.94449 0.85411 0.86711 1.20893 0.96946 0.96135 0.96909 1.21718 0.98686 0.95757 0.99955 1.21562 0.95697 1.00501 0.96990 1.21132 1.00978 0.94385 0.96614 1.23602 0.93364 0.99635 0.94714 0.89101 1.91452 1.63387 1.48691 1.32374 0.92075 0.92578 0.91232 0.90352 0.93970 0.91447 0.89012 0.88389 0.92134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.47 10.70 21.45 0.23 -51.24 15 2 C 0.03 1.64 5.25 84.66 0.44 2.09 15 3 Si 0.97 42.97 29.55 68.60 2.03 45.00 15 4 H -0.28 -12.12 7.11 99.48 0.71 -11.41 15 5 H -0.27 -11.23 7.11 99.48 0.71 -10.53 15 6 H -0.26 -11.11 7.11 99.48 0.71 -10.40 15 7 C -0.55 -32.27 9.18 25.60 0.24 -32.04 15 8 H 0.06 3.41 7.83 -2.91 -0.02 3.38 15 9 C 0.17 9.11 2.85 -12.15 -0.03 9.07 15 10 C -0.07 -3.51 4.43 30.24 0.13 -3.38 15 11 C -0.12 -4.78 5.78 30.64 0.18 -4.60 15 12 C -0.11 -3.55 5.92 30.65 0.18 -3.37 15 13 C -0.09 -3.28 5.99 30.09 0.18 -3.10 15 14 C -0.06 -2.64 6.56 29.83 0.20 -2.44 15 15 H 0.09 4.11 8.14 -2.38 -0.02 4.09 15 16 O -0.44 -25.11 14.18 -148.98 -2.11 -27.22 15 17 H 0.27 14.37 8.31 -92.71 -0.77 13.60 15 18 H 0.06 2.75 8.14 -2.38 -0.02 2.73 15 19 H 0.07 3.85 6.31 -2.38 -0.02 3.84 15 20 H 0.08 2.58 8.14 -2.39 -0.02 2.56 15 21 H 0.04 1.72 8.05 -2.38 -0.02 1.70 15 22 H 0.07 2.15 8.05 -2.39 -0.02 2.13 15 23 H 0.09 2.27 8.14 -2.39 -0.02 2.25 15 24 H 0.10 2.73 8.14 -2.39 -0.02 2.71 15 25 H 0.06 2.10 8.14 -2.39 -0.02 2.08 15 Total: -1.00 -65.29 209.11 2.82 -62.48 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: 1.16 Total: 8.74 kcal Atomic # 6 Polarization: -39.27 SS G_CDS: 1.51 Total: -37.76 kcal Atomic # 7 Polarization: -51.47 SS G_CDS: 0.23 Total: -51.24 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: -2.11 Total: -27.22 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -65.29 2.82 -62.48 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000137625825.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.403 kcal (2) G-P(sol) polarization free energy of solvation -65.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds