Wall clock time and date at job start Mon Mar 30 2020 02:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34931 * 125.78355 * 2 1 4 4 C 1.41367 * 108.08371 * 180.22601 * 3 2 1 5 5 O 1.21805 * 126.17893 * 179.75575 * 4 3 2 6 6 N 1.34864 * 107.63916 * 359.62008 * 4 3 2 7 7 C 1.36949 * 126.15656 * 180.16651 * 6 4 3 8 8 H 1.08003 * 119.99642 * 5.05415 * 7 6 4 9 9 C 1.38958 * 120.00400 * 185.05457 * 7 6 4 10 10 N 1.31430 * 120.00082 * 8.92837 * 9 7 6 11 11 Si 1.86796 * 120.00079 * 188.92588 * 9 7 6 12 12 H 1.48507 * 109.46981 * 60.00184 * 11 9 7 13 13 H 1.48500 * 109.47299 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47398 * 300.00178 * 11 9 7 15 15 N 1.36622 * 125.78995 * 179.97438 * 2 1 3 16 16 H 0.97001 * 125.91790 * 0.02805 * 15 2 1 17 17 H 1.08996 * 109.47159 * 359.97438 * 1 2 3 18 18 H 1.09000 * 109.46676 * 119.97941 * 1 2 3 19 19 H 1.08999 * 109.47440 * 239.97448 * 1 2 3 20 20 H 1.07994 * 125.95986 * 359.96085 * 3 2 1 21 21 H 0.96997 * 120.00572 * 180.02562 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2960 1.0946 0.0000 4 6 3.6428 0.6648 -0.0053 5 8 4.6267 1.3828 -0.0110 6 7 3.6414 -0.6838 0.0001 7 6 4.7463 -1.4930 0.0008 8 1 5.7326 -1.0599 0.0792 9 6 4.5984 -2.8710 -0.0993 10 7 3.4207 -3.3876 -0.3702 11 14 6.0736 -3.9893 0.1509 12 1 6.6233 -3.7857 1.5154 13 1 5.6541 -5.4050 -0.0070 14 1 7.1162 -3.6662 -0.8560 15 7 2.3060 -1.1082 0.0005 16 1 2.0016 -2.0292 0.0005 17 1 -0.3633 1.0276 0.0005 18 1 -0.3633 -0.5135 -0.8902 19 1 -0.3634 -0.5142 0.8897 20 1 1.9577 2.1202 -0.0006 21 1 3.3173 -4.3496 -0.4397 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000139665303.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:00 Heat of formation + Delta-G solvation = 32.568067 kcal Electronic energy + Delta-G solvation = -9474.734924 eV Core-core repulsion = 7545.925497 eV Total energy + Delta-G solvation = -1928.809427 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 168.064 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -40.11292 -35.38807 -33.89334 -31.42218 -28.49549 -28.02867 -24.49444 -19.66746 -19.62433 -18.53134 -15.47620 -14.97158 -14.42670 -14.02729 -13.46285 -12.74461 -12.58590 -12.52527 -11.79369 -11.46993 -11.28047 -10.87307 -10.72315 -10.56583 -9.57127 -8.24263 -8.20626 -6.85590 -6.63196 -4.18993 2.79642 3.05065 3.09697 3.13766 3.45519 4.03425 4.40041 5.13573 5.44284 5.59473 5.86936 5.92230 6.25799 6.73735 7.11768 7.21485 7.23943 7.72095 8.14068 8.70039 9.09397 9.34364 10.11501 10.33867 Molecular weight = 168.06amu Principal moments of inertia in cm(-1) A = 0.063691 B = 0.018155 C = 0.014298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.517198 B = 1541.944798 C = 1957.880468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.109 3.891 3 C -0.366 4.366 4 C 0.464 3.536 5 O -0.621 6.621 6 N -0.237 5.237 7 C -0.289 4.289 8 H 0.129 0.871 9 C 0.021 3.979 10 N -0.901 5.901 11 Si 0.953 3.047 12 H -0.268 1.268 13 H -0.280 1.280 14 H -0.268 1.268 15 N -0.445 5.445 16 H 0.445 0.555 17 H 0.081 0.919 18 H 0.068 0.932 19 H 0.068 0.932 20 H 0.137 0.863 21 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.790 -1.866 0.848 6.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.016 4.016 3 C -0.399 4.399 4 C 0.264 3.736 5 O -0.510 6.510 6 N -0.044 5.044 7 C -0.416 4.416 8 H 0.146 0.854 9 C -0.180 4.180 10 N -0.543 5.543 11 Si 0.778 3.222 12 H -0.194 1.194 13 H -0.205 1.205 14 H -0.193 1.193 15 N -0.171 5.171 16 H 0.302 0.698 17 H 0.100 0.900 18 H 0.087 0.913 19 H 0.086 0.914 20 H 0.155 0.845 21 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.101 -2.005 0.820 5.542 hybrid contribution 0.315 -1.100 0.013 1.144 sum -4.786 -3.105 0.833 5.766 Atomic orbital electron populations 1.20357 0.88212 1.03376 1.02172 1.20645 0.92872 0.87325 1.00773 1.21312 0.93519 0.97804 1.27243 1.16749 0.90652 0.80152 0.86018 1.90645 1.40584 1.56657 1.63087 1.44229 0.94488 1.05959 1.59764 1.20122 0.85818 0.87729 1.47918 0.85383 1.25452 0.99351 0.97280 0.95907 1.68955 1.23441 1.14147 1.47778 0.85530 0.79433 0.77673 0.79544 1.19352 1.20468 1.19260 1.45131 0.95485 1.08467 1.68056 0.69785 0.90038 0.91276 0.91366 0.84546 0.90714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.17 10.45 36.01 0.38 -0.80 14 2 C 0.11 2.30 7.21 -81.63 -0.59 1.71 14 3 C -0.37 -8.74 10.71 -39.57 -0.42 -9.16 14 4 C 0.46 13.47 7.88 -15.03 -0.12 13.35 14 5 O -0.62 -19.92 17.86 5.10 0.09 -19.83 14 6 N -0.24 -6.74 3.68 -13.64 -0.05 -6.79 14 7 C -0.29 -8.18 10.08 -15.00 -0.15 -8.34 14 8 H 0.13 3.64 7.83 -52.48 -0.41 3.23 14 9 C 0.02 0.55 5.48 -17.46 -0.10 0.45 14 10 N -0.90 -22.91 10.74 55.50 0.60 -22.31 14 11 Si 0.95 19.94 29.56 -169.99 -5.03 14.91 14 12 H -0.27 -5.57 7.11 56.52 0.40 -5.17 14 13 H -0.28 -5.65 7.11 56.52 0.40 -5.25 14 14 H -0.27 -5.57 7.11 56.52 0.40 -5.16 14 15 N -0.44 -10.85 6.64 33.70 0.22 -10.62 14 16 H 0.45 10.50 6.37 -182.58 -1.16 9.34 14 17 H 0.08 0.98 8.10 -51.93 -0.42 0.56 14 18 H 0.07 0.88 8.14 -51.93 -0.42 0.46 14 19 H 0.07 0.85 8.14 -51.93 -0.42 0.43 14 20 H 0.14 2.88 8.06 -52.49 -0.42 2.46 14 21 H 0.28 6.64 8.31 -40.82 -0.34 6.30 14 LS Contribution 196.56 15.07 2.96 2.96 Total: -1.00 -32.67 196.56 -4.60 -37.27 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -2.40 Total: 7.20 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: -1.00 Total: -2.79 kcal Atomic # 7 Polarization: -40.49 SS G_CDS: 0.77 Total: -39.72 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: 0.09 Total: -19.83 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.03 Total: 14.91 kcal Total LS contribution 2.96 Total: 2.96 kcal Total: -32.67 -4.60 -37.27 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139665303.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.835 kcal (2) G-P(sol) polarization free energy of solvation -32.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds