Wall clock time and date at job start Mon Mar 30 2020 02:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34931 * 125.78355 * 2 1 4 4 C 1.41367 * 108.08371 * 180.22601 * 3 2 1 5 5 O 1.21805 * 126.17893 * 179.75575 * 4 3 2 6 6 N 1.34864 * 107.63916 * 359.62008 * 4 3 2 7 7 C 1.36949 * 126.15656 * 180.16651 * 6 4 3 8 8 H 1.08003 * 119.99642 * 5.05415 * 7 6 4 9 9 C 1.38958 * 120.00400 * 185.05457 * 7 6 4 10 10 N 1.31430 * 120.00082 * 8.92837 * 9 7 6 11 11 Si 1.86796 * 120.00079 * 188.92588 * 9 7 6 12 12 H 1.48507 * 109.46981 * 60.00184 * 11 9 7 13 13 H 1.48500 * 109.47299 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47398 * 300.00178 * 11 9 7 15 15 N 1.36622 * 125.78995 * 179.97438 * 2 1 3 16 16 H 0.97001 * 125.91790 * 0.02805 * 15 2 1 17 17 H 1.08996 * 109.47159 * 359.97438 * 1 2 3 18 18 H 1.09000 * 109.46676 * 119.97941 * 1 2 3 19 19 H 1.08999 * 109.47440 * 239.97448 * 1 2 3 20 20 H 1.07994 * 125.95986 * 359.96085 * 3 2 1 21 21 H 0.96997 * 120.00572 * 180.02562 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2960 1.0946 0.0000 4 6 3.6428 0.6648 -0.0053 5 8 4.6267 1.3828 -0.0110 6 7 3.6414 -0.6838 0.0001 7 6 4.7463 -1.4930 0.0008 8 1 5.7326 -1.0599 0.0792 9 6 4.5984 -2.8710 -0.0993 10 7 3.4207 -3.3876 -0.3702 11 14 6.0736 -3.9893 0.1509 12 1 6.6233 -3.7857 1.5154 13 1 5.6541 -5.4050 -0.0070 14 1 7.1162 -3.6662 -0.8560 15 7 2.3060 -1.1082 0.0005 16 1 2.0016 -2.0292 0.0005 17 1 -0.3633 1.0276 0.0005 18 1 -0.3633 -0.5135 -0.8902 19 1 -0.3634 -0.5142 0.8897 20 1 1.9577 2.1202 -0.0006 21 1 3.3173 -4.3496 -0.4397 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000139665303.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:00 Heat of formation + Delta-G solvation = 8.627015 kcal Electronic energy + Delta-G solvation = -9475.773086 eV Core-core repulsion = 7545.925497 eV Total energy + Delta-G solvation = -1929.847589 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 168.064 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -42.09921 -37.55779 -35.84437 -33.29603 -30.42882 -29.70348 -26.40443 -21.65603 -21.47291 -20.58353 -17.48365 -16.85492 -16.42856 -15.95075 -15.40019 -14.43060 -14.16423 -14.09037 -13.52369 -13.18721 -12.97981 -12.79670 -12.60317 -12.17031 -11.42272 -10.44145 -10.15074 -8.84341 -8.64580 -6.31409 1.01022 1.29732 1.44538 1.47130 1.63220 2.24285 2.38073 3.01894 3.67188 4.09928 4.60713 4.82457 4.87929 5.08233 5.18151 5.35840 5.45491 5.73523 6.19890 6.67899 7.06530 7.33582 7.99908 8.34277 Molecular weight = 168.06amu Principal moments of inertia in cm(-1) A = 0.063691 B = 0.018155 C = 0.014298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.517198 B = 1541.944798 C = 1957.880468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.141 3.859 3 C -0.387 4.387 4 C 0.421 3.579 5 O -0.676 6.676 6 N -0.257 5.257 7 C -0.349 4.349 8 H 0.106 0.894 9 C -0.003 4.003 10 N -0.906 5.906 11 Si 1.023 2.977 12 H -0.266 1.266 13 H -0.258 1.258 14 H -0.267 1.267 15 N -0.446 5.446 16 H 0.448 0.552 17 H 0.110 0.890 18 H 0.092 0.908 19 H 0.094 0.906 20 H 0.161 0.839 21 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.643 -3.446 0.917 8.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.016 3.984 3 C -0.418 4.418 4 C 0.224 3.776 5 O -0.570 6.570 6 N -0.063 5.063 7 C -0.475 4.475 8 H 0.124 0.876 9 C -0.203 4.203 10 N -0.546 5.546 11 Si 0.843 3.157 12 H -0.191 1.191 13 H -0.181 1.181 14 H -0.192 1.192 15 N -0.174 5.174 16 H 0.306 0.694 17 H 0.129 0.871 18 H 0.111 0.889 19 H 0.113 0.887 20 H 0.179 0.821 21 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.017 -3.601 0.883 7.936 hybrid contribution 0.764 -0.675 -0.026 1.019 sum -6.254 -4.275 0.857 7.624 Atomic orbital electron populations 1.20664 0.82377 1.06188 1.04452 1.21711 0.95730 0.84998 0.96007 1.21485 0.91415 1.00016 1.28894 1.17610 0.92190 0.80567 0.87238 1.90558 1.42538 1.57985 1.65883 1.44339 0.96217 1.06040 1.59664 1.20200 0.85732 0.89183 1.52385 0.87594 1.26407 1.02679 0.97467 0.93776 1.68969 1.24616 1.15319 1.45702 0.84541 0.75649 0.76146 0.79353 1.19061 1.18133 1.19200 1.45316 0.94259 1.09628 1.68206 0.69447 0.87090 0.88940 0.88726 0.82101 0.89408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.85 10.45 71.24 0.74 -1.11 14 2 C 0.14 5.61 7.21 41.05 0.30 5.90 14 3 C -0.39 -18.34 10.71 22.28 0.24 -18.10 14 4 C 0.42 25.42 7.88 85.00 0.67 26.09 14 5 O -0.68 -45.89 17.86 -4.68 -0.08 -45.98 14 6 N -0.26 -15.01 3.68 -315.18 -1.16 -16.17 14 7 C -0.35 -20.48 10.08 84.07 0.85 -19.64 14 8 H 0.11 6.45 7.83 -2.91 -0.02 6.42 14 9 C 0.00 -0.13 5.48 84.93 0.47 0.33 14 10 N -0.91 -44.78 10.74 21.67 0.23 -44.54 14 11 Si 1.02 40.10 29.56 68.60 2.03 42.12 14 12 H -0.27 -10.30 7.11 99.48 0.71 -9.59 14 13 H -0.26 -9.14 7.11 99.48 0.71 -8.44 14 14 H -0.27 -10.44 7.11 99.48 0.71 -9.73 14 15 N -0.45 -21.42 6.64 -47.31 -0.31 -21.74 14 16 H 0.45 20.48 6.37 -213.31 -1.36 19.13 14 17 H 0.11 2.05 8.10 -2.39 -0.02 2.03 14 18 H 0.09 1.86 8.14 -2.39 -0.02 1.84 14 19 H 0.09 1.85 8.14 -2.39 -0.02 1.83 14 20 H 0.16 6.62 8.06 -2.91 -0.02 6.59 14 21 H 0.30 13.14 8.31 -92.71 -0.77 12.37 14 Total: -1.00 -74.23 196.56 3.85 -70.38 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: -0.11 Total: 22.44 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: 3.26 Total: -6.51 kcal Atomic # 7 Polarization: -81.21 SS G_CDS: -1.24 Total: -82.45 kcal Atomic # 8 Polarization: -45.89 SS G_CDS: -0.08 Total: -45.98 kcal Atomic # 14 Polarization: 40.10 SS G_CDS: 2.03 Total: 42.12 kcal Total: -74.23 3.85 -70.38 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139665303.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.008 kcal (2) G-P(sol) polarization free energy of solvation -74.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds