Wall clock time and date at job start Mon Mar 30 2020 01:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00459 * 2 1 4 4 H 1.48502 * 109.47005 * 270.00058 * 3 2 1 5 5 H 1.48504 * 109.46671 * 29.99913 * 3 2 1 6 6 H 1.48491 * 109.47154 * 149.99833 * 3 2 1 7 7 C 1.37875 * 119.99511 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99985 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00485 * 0.02562 * 7 2 1 10 10 C 1.56273 * 116.74709 * 62.39706 * 9 7 2 11 11 C 1.54658 * 103.25770 * 158.87734 * 10 9 7 12 12 N 1.49517 * 105.28624 * 0.72552 * 11 10 9 13 13 C 1.49518 * 105.92347 * 71.25735 * 12 11 10 14 14 C 1.54971 * 105.24603 * 288.72760 * 13 12 11 15 15 C 1.50469 * 102.03330 * 324.85028 * 12 11 10 16 16 H 0.96998 * 119.99286 * 0.02562 * 1 2 3 17 17 H 1.09003 * 110.59470 * 40.45864 * 10 9 7 18 18 H 1.08999 * 110.85264 * 277.41542 * 10 9 7 19 19 H 1.09005 * 110.28096 * 241.77462 * 11 10 9 20 20 H 1.09000 * 110.35964 * 119.71806 * 11 10 9 21 21 H 1.09005 * 110.27582 * 47.69934 * 13 12 11 22 22 H 1.09002 * 110.27834 * 169.78521 * 13 12 11 23 23 H 1.09007 * 110.67639 * 240.92864 * 14 13 12 24 24 H 1.08997 * 110.70091 * 117.76864 * 14 13 12 25 25 H 1.09002 * 111.91007 * 171.59817 * 15 12 11 26 26 H 1.08995 * 111.90966 * 297.73752 * 15 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 0.3398 -2.7852 -1.2364 11 6 0.1758 -4.3228 -1.2081 12 7 0.9471 -4.7796 -0.0114 13 6 0.1592 -4.3342 1.1788 14 6 0.3240 -2.7939 1.2234 15 6 2.1048 -3.8185 0.0012 16 1 -0.4849 0.8401 -0.0004 17 1 0.8311 -2.4676 -2.1562 18 1 -0.6268 -2.2932 -1.1284 19 1 0.5897 -4.7637 -2.1151 20 1 -0.8758 -4.5902 -1.1045 21 1 -0.8911 -4.5991 1.0572 22 1 0.5604 -4.7837 2.0871 23 1 0.8030 -2.4848 2.1525 24 1 -0.6400 -2.2997 1.1033 25 1 2.7036 -3.9150 0.9068 26 1 2.7168 -3.9073 -0.8963 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000140463534.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:42 Heat of formation + Delta-G solvation = 14.656654 kcal Electronic energy + Delta-G solvation = -9950.632631 eV Core-core repulsion = 8222.305512 eV Total energy + Delta-G solvation = -1728.327119 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 167.101 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -39.42631 -32.78259 -29.47603 -29.02834 -27.08796 -24.52983 -21.19371 -19.90101 -18.46847 -15.97914 -14.82682 -14.73066 -14.28325 -13.71580 -12.21837 -11.76796 -11.70443 -11.08790 -10.91823 -10.88297 -10.70885 -10.42842 -10.31738 -10.09167 -9.21112 -9.10859 -8.89037 -8.37756 -7.92614 -6.07573 -4.11621 3.27395 3.34441 3.37657 4.38152 5.02661 5.21286 5.70117 5.80741 6.21511 6.22270 6.32107 6.40123 6.48189 6.55747 6.78798 6.92301 6.97250 7.00764 7.17138 7.41383 7.60707 7.64790 7.73014 7.90759 8.42171 8.89927 9.53291 11.01579 Molecular weight = 167.10amu Principal moments of inertia in cm(-1) A = 0.081648 B = 0.016793 C = 0.016626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 342.853788 B = 1666.967852 C = 1683.672839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.069 3.931 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.496 4.496 8 H 0.062 0.938 9 C 0.070 3.930 10 C -0.136 4.136 11 C 0.008 3.992 12 N -0.484 5.484 13 C 0.008 3.992 14 C -0.136 4.136 15 C 0.001 3.999 16 H 0.260 0.740 17 H 0.047 0.953 18 H 0.068 0.932 19 H 0.062 0.938 20 H 0.057 0.943 21 H 0.057 0.943 22 H 0.062 0.938 23 H 0.047 0.953 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.264 -3.752 -0.003 3.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.134 4.134 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.534 4.534 8 H 0.080 0.920 9 C 0.069 3.931 10 C -0.176 4.176 11 C -0.121 4.121 12 N -0.205 5.205 13 C -0.121 4.121 14 C -0.175 4.175 15 C -0.128 4.128 16 H 0.070 0.930 17 H 0.065 0.935 18 H 0.087 0.913 19 H 0.081 0.919 20 H 0.075 0.925 21 H 0.075 0.925 22 H 0.081 0.919 23 H 0.066 0.934 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.237 -4.397 -0.001 4.404 hybrid contribution 0.036 1.808 -0.013 1.809 sum 0.274 -2.589 -0.014 2.603 Atomic orbital electron populations 1.69979 1.05920 1.26505 1.49394 1.24981 0.94870 0.99062 0.94473 0.86574 0.79910 0.83276 0.78142 1.20634 1.21226 1.19799 1.20471 0.92560 0.88922 1.51470 0.92017 1.20939 0.89911 0.91799 0.90493 1.23194 1.01728 0.92353 1.00277 1.23583 0.97348 0.96749 0.94378 1.69952 1.05820 1.42398 1.02333 1.23640 0.97237 0.96767 0.94434 1.23228 1.01734 0.92352 1.00193 1.24584 0.94408 0.93528 1.00260 0.93031 0.93454 0.91350 0.91939 0.92470 0.92452 0.91911 0.93438 0.91302 0.91425 0.91425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.57 11.79 55.43 0.65 -23.92 15 2 C 0.07 1.88 5.39 -17.82 -0.10 1.78 15 3 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 15 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 15 6 H -0.27 -6.31 7.11 56.52 0.40 -5.91 15 7 C -0.50 -13.44 8.97 -34.44 -0.31 -13.74 15 8 H 0.06 1.65 7.81 -52.49 -0.41 1.24 15 9 C 0.07 1.74 0.97 -149.91 -0.15 1.59 15 10 C -0.14 -3.21 5.54 -24.10 -0.13 -3.34 15 11 C 0.01 0.17 6.61 -1.49 -0.01 0.16 15 12 N -0.48 -10.12 6.94 -221.85 -1.54 -11.66 15 13 C 0.01 0.17 6.62 -1.32 -0.01 0.16 15 14 C -0.14 -3.19 5.60 -23.95 -0.13 -3.33 15 15 C 0.00 0.01 6.47 0.44 0.00 0.02 15 16 H 0.26 6.95 8.31 -40.82 -0.34 6.62 15 17 H 0.05 1.13 8.14 -51.93 -0.42 0.70 15 18 H 0.07 1.72 7.46 -51.93 -0.39 1.33 15 19 H 0.06 1.18 8.14 -51.93 -0.42 0.75 15 20 H 0.06 1.09 7.69 -51.93 -0.40 0.69 15 21 H 0.06 1.09 7.69 -51.93 -0.40 0.69 15 22 H 0.06 1.18 8.14 -51.93 -0.42 0.76 15 23 H 0.05 1.13 8.14 -51.93 -0.42 0.70 15 24 H 0.07 1.73 7.44 -51.93 -0.39 1.35 15 25 H 0.07 1.44 8.14 -51.93 -0.42 1.02 15 26 H 0.07 1.44 8.14 -51.93 -0.42 1.02 15 LS Contribution 211.03 15.07 3.18 3.18 Total: -1.00 -27.44 211.03 -7.22 -34.66 By element: Atomic # 1 Polarization: 2.22 SS G_CDS: -3.65 Total: -1.43 kcal Atomic # 6 Polarization: -15.87 SS G_CDS: -0.83 Total: -16.70 kcal Atomic # 7 Polarization: -34.69 SS G_CDS: -0.89 Total: -35.58 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 3.18 Total: 3.18 kcal Total: -27.44 -7.22 -34.66 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000140463534.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.316 kcal (2) G-P(sol) polarization free energy of solvation -27.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds