Wall clock time and date at job start Mon Mar 30 2020 01:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00459 * 2 1 4 4 H 1.48502 * 109.47005 * 270.00058 * 3 2 1 5 5 H 1.48504 * 109.46671 * 29.99913 * 3 2 1 6 6 H 1.48491 * 109.47154 * 149.99833 * 3 2 1 7 7 C 1.37875 * 119.99511 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99985 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00485 * 0.02562 * 7 2 1 10 10 C 1.56273 * 116.74709 * 62.39706 * 9 7 2 11 11 C 1.54658 * 103.25770 * 158.87734 * 10 9 7 12 12 N 1.49517 * 105.28624 * 0.72552 * 11 10 9 13 13 C 1.49518 * 105.92347 * 71.25735 * 12 11 10 14 14 C 1.54971 * 105.24603 * 288.72760 * 13 12 11 15 15 C 1.50469 * 102.03330 * 324.85028 * 12 11 10 16 16 H 0.96998 * 119.99286 * 0.02562 * 1 2 3 17 17 H 1.09003 * 110.59470 * 40.45864 * 10 9 7 18 18 H 1.08999 * 110.85264 * 277.41542 * 10 9 7 19 19 H 1.09005 * 110.28096 * 241.77462 * 11 10 9 20 20 H 1.09000 * 110.35964 * 119.71806 * 11 10 9 21 21 H 1.09005 * 110.27582 * 47.69934 * 13 12 11 22 22 H 1.09002 * 110.27834 * 169.78521 * 13 12 11 23 23 H 1.09007 * 110.67639 * 240.92864 * 14 13 12 24 24 H 1.08997 * 110.70091 * 117.76864 * 14 13 12 25 25 H 1.09002 * 111.91007 * 171.59817 * 15 12 11 26 26 H 1.08995 * 111.90966 * 297.73752 * 15 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 0.3398 -2.7852 -1.2364 11 6 0.1758 -4.3228 -1.2081 12 7 0.9471 -4.7796 -0.0114 13 6 0.1592 -4.3342 1.1788 14 6 0.3240 -2.7939 1.2234 15 6 2.1048 -3.8185 0.0012 16 1 -0.4849 0.8401 -0.0004 17 1 0.8311 -2.4676 -2.1562 18 1 -0.6268 -2.2932 -1.1284 19 1 0.5897 -4.7637 -2.1151 20 1 -0.8758 -4.5902 -1.1045 21 1 -0.8911 -4.5991 1.0572 22 1 0.5604 -4.7837 2.0871 23 1 0.8030 -2.4848 2.1525 24 1 -0.6400 -2.2997 1.1033 25 1 2.7036 -3.9150 0.9068 26 1 2.7168 -3.9073 -0.8963 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000140463534.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:42 Heat of formation + Delta-G solvation = -4.029731 kcal Electronic energy + Delta-G solvation = -9951.442934 eV Core-core repulsion = 8222.305512 eV Total energy + Delta-G solvation = -1729.137421 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 167.101 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.19104 -34.80679 -31.22813 -30.91445 -28.86448 -26.53214 -22.96191 -21.61134 -20.38774 -17.95275 -16.72328 -16.54244 -16.00527 -15.55242 -14.06158 -13.69473 -13.42602 -12.95202 -12.80089 -12.68729 -12.44663 -12.30982 -12.07701 -11.89866 -11.09918 -10.98876 -10.80897 -10.36931 -9.67994 -8.13024 -6.23345 1.41686 1.43246 1.52805 2.42366 3.15212 3.31805 4.01016 4.09052 4.48289 4.51843 4.58257 4.70825 4.80626 4.85244 4.98284 5.14201 5.14281 5.20637 5.31851 5.55428 5.65591 5.81424 5.92647 5.93181 6.40305 6.83807 7.44428 8.94902 Molecular weight = 167.10amu Principal moments of inertia in cm(-1) A = 0.081648 B = 0.016793 C = 0.016626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 342.853788 B = 1666.967852 C = 1683.672839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.023 3.977 3 Si 0.954 3.046 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.268 1.268 7 C -0.517 4.517 8 H 0.057 0.943 9 C 0.043 3.957 10 C -0.130 4.130 11 C 0.016 3.984 12 N -0.476 5.476 13 C 0.016 3.984 14 C -0.130 4.130 15 C 0.009 3.991 16 H 0.259 0.741 17 H 0.034 0.966 18 H 0.043 0.957 19 H 0.082 0.918 20 H 0.073 0.927 21 H 0.073 0.927 22 H 0.083 0.917 23 H 0.035 0.965 24 H 0.043 0.957 25 H 0.073 0.927 26 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.676 -4.545 -0.001 4.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.177 4.177 3 Si 0.780 3.220 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.192 1.192 7 C -0.555 4.555 8 H 0.076 0.924 9 C 0.042 3.958 10 C -0.170 4.170 11 C -0.113 4.113 12 N -0.196 5.196 13 C -0.113 4.113 14 C -0.170 4.170 15 C -0.120 4.120 16 H 0.068 0.932 17 H 0.053 0.947 18 H 0.061 0.939 19 H 0.101 0.899 20 H 0.092 0.908 21 H 0.092 0.908 22 H 0.101 0.899 23 H 0.054 0.946 24 H 0.062 0.938 25 H 0.091 0.909 26 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.657 -5.204 0.000 5.245 hybrid contribution -0.096 2.057 -0.014 2.059 sum 0.561 -3.147 -0.014 3.197 Atomic orbital electron populations 1.70098 1.07086 1.27068 1.50158 1.25695 0.95647 1.02124 0.94255 0.85618 0.78810 0.79423 0.78167 1.20238 1.21066 1.19208 1.20817 0.92706 0.90514 1.51473 0.92437 1.21085 0.91077 0.92288 0.91386 1.23048 0.99922 0.94818 0.99191 1.23579 0.98563 0.94031 0.95106 1.69964 1.05494 1.41546 1.02636 1.23637 0.98424 0.94049 0.95169 1.23085 0.99935 0.94825 0.99114 1.24496 0.94585 0.92069 1.00852 0.93170 0.94715 0.93859 0.89935 0.90829 0.90818 0.89883 0.94646 0.93815 0.90867 0.90881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.21 11.79 21.45 0.25 -50.96 15 2 C 0.02 1.26 5.39 84.65 0.46 1.72 15 3 Si 0.95 42.94 29.54 68.60 2.03 44.97 15 4 H -0.28 -12.21 7.11 99.48 0.71 -11.50 15 5 H -0.28 -12.66 7.11 99.48 0.71 -11.96 15 6 H -0.27 -11.69 7.11 99.48 0.71 -10.99 15 7 C -0.52 -28.07 8.97 25.60 0.23 -27.84 15 8 H 0.06 3.07 7.81 -2.91 -0.02 3.05 15 9 C 0.04 2.13 0.97 -49.20 -0.05 2.08 15 10 C -0.13 -6.08 5.54 32.30 0.18 -5.90 15 11 C 0.02 0.61 6.61 86.36 0.57 1.18 15 12 N -0.48 -18.52 6.94 -855.81 -5.94 -24.46 15 13 C 0.02 0.61 6.62 86.47 0.57 1.19 15 14 C -0.13 -6.07 5.60 32.40 0.18 -5.88 15 15 C 0.01 0.36 6.47 87.06 0.56 0.92 15 16 H 0.26 14.04 8.31 -92.71 -0.77 13.27 15 17 H 0.03 1.65 8.14 -2.39 -0.02 1.63 15 18 H 0.04 2.20 7.46 -2.39 -0.02 2.18 15 19 H 0.08 2.84 8.14 -2.38 -0.02 2.82 15 20 H 0.07 2.58 7.69 -2.39 -0.02 2.56 15 21 H 0.07 2.58 7.69 -2.38 -0.02 2.57 15 22 H 0.08 2.85 8.14 -2.39 -0.02 2.83 15 23 H 0.03 1.67 8.14 -2.38 -0.02 1.65 15 24 H 0.04 2.22 7.44 -2.39 -0.02 2.20 15 25 H 0.07 2.98 8.14 -2.39 -0.02 2.96 15 26 H 0.07 2.98 8.14 -2.39 -0.02 2.96 15 Total: -1.00 -56.92 211.03 0.18 -56.74 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: 1.14 Total: 6.25 kcal Atomic # 6 Polarization: -35.24 SS G_CDS: 2.71 Total: -32.53 kcal Atomic # 7 Polarization: -69.73 SS G_CDS: -5.69 Total: -75.42 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -56.92 0.18 -56.74 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000140463534.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.706 kcal (2) G-P(sol) polarization free energy of solvation -56.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds