Wall clock time and date at job start Mon Mar 30 2020 01:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00086 * 2 1 4 4 H 1.48501 * 109.47152 * 270.00110 * 3 2 1 5 5 H 1.48498 * 109.46956 * 30.00561 * 3 2 1 6 6 H 1.48503 * 109.46711 * 150.00621 * 3 2 1 7 7 C 1.37883 * 119.99545 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99601 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00147 * 359.97438 * 7 2 1 10 10 H 1.08999 * 110.60034 * 325.58173 * 9 7 2 11 11 C 1.54661 * 110.81458 * 202.47080 * 9 7 2 12 12 N 1.49513 * 105.28428 * 242.15914 * 11 9 7 13 13 C 1.49520 * 105.92443 * 71.26221 * 12 11 9 14 14 C 1.54662 * 105.28262 * 288.73370 * 13 12 11 15 15 C 1.56244 * 110.67336 * 88.59301 * 9 7 2 16 16 H 1.09005 * 117.38912 * 277.96990 * 15 9 7 17 17 C 1.50463 * 102.03967 * 324.84676 * 12 11 9 18 18 H 0.96998 * 119.99838 * 359.97438 * 1 2 3 19 19 H 1.09004 * 110.27826 * 123.20330 * 11 9 7 20 20 H 1.08998 * 110.27590 * 1.10903 * 11 9 7 21 21 H 1.08997 * 110.28253 * 47.68666 * 13 12 11 22 22 H 1.09000 * 110.28431 * 169.78567 * 13 12 11 23 23 H 1.08997 * 110.66903 * 240.91175 * 14 13 12 24 24 H 1.09004 * 110.80967 * 117.84209 * 14 13 12 25 25 H 1.08993 * 111.91581 * 171.59994 * 17 12 11 26 26 H 1.08999 * 111.91100 * 297.81555 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.6999 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 1 0.3305 -2.4105 0.5765 11 6 2.1332 -3.6432 0.5514 12 7 2.2733 -4.6129 -0.5780 13 6 3.1659 -3.9511 -1.5785 14 6 2.3153 -2.8166 -2.1961 15 6 0.9435 -2.9586 -1.4619 16 1 0.0767 -2.5175 -1.9543 17 6 0.9279 -4.5149 -1.2445 18 1 -0.4850 0.8400 0.0004 19 1 1.6449 -4.1206 1.4010 20 1 3.1107 -3.2592 0.8432 21 1 4.0456 -3.5380 -1.0851 22 1 3.4630 -4.6627 -2.3488 23 1 2.1949 -2.9665 -3.2690 24 1 2.7618 -1.8432 -1.9926 25 1 0.9016 -5.0573 -2.1895 26 1 0.1213 -4.8246 -0.5800 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000141805184.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:58 Heat of formation + Delta-G solvation = -3.824434 kcal Electronic energy + Delta-G solvation = -9935.512230 eV Core-core repulsion = 8206.383711 eV Total energy + Delta-G solvation = -1729.128519 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 167.101 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.29826 -34.88231 -31.28234 -30.94956 -29.12606 -26.19124 -22.72899 -21.75969 -20.13551 -18.39765 -16.88845 -16.46972 -16.14333 -15.41889 -14.06004 -13.94197 -13.48381 -12.93362 -12.67650 -12.52203 -12.41947 -12.25943 -11.97326 -11.82421 -11.47602 -10.95700 -10.74334 -10.41196 -9.68999 -8.14560 -6.20569 1.38911 1.40457 1.49915 2.41093 3.15030 3.30246 3.98518 4.07658 4.36240 4.52002 4.63591 4.69930 4.78691 4.84060 4.99604 5.08834 5.09956 5.38535 5.42939 5.54243 5.55674 5.74204 5.87819 5.97152 6.36165 6.89473 7.43294 8.95476 Molecular weight = 167.10amu Principal moments of inertia in cm(-1) A = 0.073100 B = 0.017472 C = 0.016679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 382.943915 B = 1602.155494 C = 1678.316373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.011 3.989 3 Si 0.950 3.050 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.505 4.505 8 H 0.053 0.947 9 C 0.013 3.987 10 H 0.012 0.988 11 C 0.021 3.979 12 N -0.478 5.478 13 C 0.023 3.977 14 C -0.136 4.136 15 C -0.125 4.125 16 H 0.070 0.930 17 C 0.012 3.988 18 H 0.260 0.740 19 H 0.063 0.937 20 H 0.061 0.939 21 H 0.064 0.936 22 H 0.092 0.908 23 H 0.061 0.939 24 H 0.064 0.936 25 H 0.094 0.906 26 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.791 -4.810 -3.225 6.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.187 4.187 3 Si 0.776 3.224 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.543 4.543 8 H 0.071 0.929 9 C -0.006 4.006 10 H 0.031 0.969 11 C -0.107 4.107 12 N -0.199 5.199 13 C -0.106 4.106 14 C -0.174 4.174 15 C -0.145 4.145 16 H 0.089 0.911 17 C -0.117 4.117 18 H 0.069 0.931 19 H 0.081 0.919 20 H 0.080 0.920 21 H 0.083 0.917 22 H 0.110 0.890 23 H 0.080 0.920 24 H 0.082 0.918 25 H 0.112 0.888 26 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.914 -5.394 -2.984 7.302 hybrid contribution -0.215 2.053 -0.079 2.066 sum 3.700 -3.341 -3.063 5.851 Atomic orbital electron populations 1.70074 1.07396 1.27208 1.51853 1.25749 0.95559 1.02420 0.95004 0.85674 0.78826 0.79693 0.78226 1.20159 1.21179 1.19120 1.21276 0.92478 0.91281 1.49308 0.92887 1.20320 0.94839 0.93110 0.92376 0.96933 1.23618 0.99921 0.92490 0.94712 1.69922 1.06550 1.37620 1.05775 1.23458 0.96326 0.95195 0.95621 1.23093 0.96029 0.99941 0.98367 1.24274 0.96385 0.94997 0.98872 0.91146 1.24506 0.92445 0.95371 0.99368 0.93118 0.91859 0.92001 0.91749 0.88960 0.92000 0.91754 0.88812 0.90797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.29 12.98 21.45 0.28 -54.01 15 2 C 0.01 0.61 5.46 84.66 0.46 1.07 15 3 Si 0.95 43.42 29.54 68.60 2.03 45.45 15 4 H -0.28 -12.31 7.11 99.48 0.71 -11.60 15 5 H -0.29 -12.97 7.11 99.48 0.71 -12.26 15 6 H -0.27 -11.77 7.11 99.48 0.71 -11.07 15 7 C -0.51 -27.18 6.22 25.60 0.16 -27.02 15 8 H 0.05 2.81 7.41 -2.91 -0.02 2.79 15 9 C 0.01 0.67 2.70 -9.85 -0.03 0.64 15 10 H 0.01 0.70 7.66 -2.39 -0.02 0.69 15 11 C 0.02 0.92 6.26 86.36 0.54 1.46 15 12 N -0.48 -18.23 6.94 -856.49 -5.94 -24.18 15 13 C 0.02 0.81 6.61 86.36 0.57 1.38 15 14 C -0.14 -5.39 6.11 32.29 0.20 -5.19 15 15 C -0.12 -5.53 5.17 -7.08 -0.04 -5.56 15 16 H 0.07 3.35 8.14 -2.38 -0.02 3.33 15 17 C 0.01 0.43 6.75 87.06 0.59 1.02 15 18 H 0.26 14.54 8.31 -92.71 -0.77 13.77 15 19 H 0.06 2.61 8.14 -2.39 -0.02 2.59 15 20 H 0.06 2.68 7.14 -2.39 -0.02 2.66 15 21 H 0.06 2.30 7.69 -2.39 -0.02 2.28 15 22 H 0.09 2.74 8.14 -2.39 -0.02 2.72 15 23 H 0.06 2.15 8.14 -2.39 -0.02 2.13 15 24 H 0.06 2.89 6.09 -2.38 -0.01 2.87 15 25 H 0.09 2.96 8.14 -2.39 -0.02 2.94 15 26 H 0.07 2.70 8.14 -2.39 -0.02 2.68 15 Total: -1.00 -58.39 209.22 -0.04 -58.43 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: 1.14 Total: 6.51 kcal Atomic # 6 Polarization: -34.65 SS G_CDS: 2.46 Total: -32.20 kcal Atomic # 7 Polarization: -72.52 SS G_CDS: -5.66 Total: -78.19 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -58.39 -0.04 -58.43 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000141805184.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.607 kcal (2) G-P(sol) polarization free energy of solvation -58.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds