Wall clock time and date at job start Mon Mar 30 2020 02:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46819 * 111.00016 * 2 1 4 4 C 1.50217 * 110.21010 * 288.09507 * 3 2 1 5 5 C 1.34082 * 122.69762 * 342.72244 * 4 3 2 6 6 C 1.40069 * 118.82240 * 180.51353 * 5 4 3 7 7 H 1.07998 * 120.00416 * 17.15208 * 6 5 4 8 8 C 1.40313 * 119.99665 * 197.15364 * 6 5 4 9 9 N 1.30684 * 119.99917 * 15.43508 * 8 6 5 10 10 Si 1.86803 * 119.99934 * 195.43569 * 8 6 5 11 11 H 1.48493 * 109.47044 * 90.00071 * 10 8 6 12 12 H 1.48501 * 109.46946 * 210.00067 * 10 8 6 13 13 H 1.48497 * 109.46953 * 329.99623 * 10 8 6 14 14 C 1.50372 * 122.34818 * 0.53341 * 5 4 3 15 15 C 1.47157 * 110.98551 * 236.85697 * 2 1 3 16 16 H 1.09004 * 109.47005 * 63.95731 * 1 2 3 17 17 H 1.08998 * 109.47130 * 183.95372 * 1 2 3 18 18 H 1.08998 * 109.47042 * 303.95709 * 1 2 3 19 19 H 1.09003 * 109.34499 * 167.86712 * 3 2 1 20 20 H 1.08998 * 109.22554 * 48.24757 * 3 2 1 21 21 H 1.07995 * 118.65053 * 162.74279 * 4 3 2 22 22 H 0.97005 * 120.00018 * 179.97438 * 9 8 6 23 23 H 1.09000 * 109.43628 * 103.32691 * 14 5 4 24 24 H 1.08994 * 109.43676 * 223.20340 * 14 5 4 25 25 H 1.09001 * 109.61484 * 293.74392 * 15 2 1 26 26 H 1.09001 * 109.59519 * 173.23760 * 15 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3707 0.0000 4 6 1.7724 2.0121 -1.3400 5 6 1.4921 1.3047 -2.4440 6 6 1.3101 1.9858 -3.6543 7 1 1.6588 3.0024 -3.7596 8 6 0.6746 1.3471 -4.7300 9 7 -0.0093 0.2520 -4.5280 10 14 0.8062 2.0622 -6.4507 11 1 1.9933 1.4900 -7.1350 12 1 -0.4185 1.7273 -7.2209 13 1 0.9482 3.5378 -6.3638 14 6 1.3657 -0.1937 -2.4290 15 6 1.9960 -0.7512 -1.1504 16 1 -0.3633 0.4512 -0.9234 17 1 -0.3633 -1.0252 0.0709 18 1 -0.3633 0.5740 0.8524 19 1 3.0633 1.3474 0.2162 20 1 1.4840 1.9514 0.7678 21 1 1.8411 3.0870 -1.4173 22 1 -0.4490 -0.1894 -5.2716 23 1 0.3116 -0.4691 -2.4637 24 1 1.8774 -0.6095 -3.2969 25 1 1.7411 -1.8059 -1.0466 26 1 3.0790 -0.6369 -1.1965 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000144025840.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:33 Heat of formation + Delta-G solvation = 8.790302 kcal Electronic energy + Delta-G solvation = -9770.902548 eV Core-core repulsion = 8042.321045 eV Total energy + Delta-G solvation = -1728.581503 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 167.101 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.11672 -34.09808 -30.85874 -29.36377 -26.99602 -24.77400 -22.06815 -20.80092 -17.64948 -15.96621 -15.12214 -14.46809 -14.01136 -13.30624 -12.85653 -12.31503 -11.74776 -11.54176 -11.30197 -10.96876 -10.87401 -10.74876 -10.40098 -10.12585 -9.66366 -9.14550 -9.13111 -7.43121 -7.30038 -6.53107 -4.25562 2.96504 3.10087 3.14631 3.87215 4.00328 5.11301 5.26817 5.99710 6.11431 6.35759 6.48796 6.57366 6.63942 6.77776 6.86390 7.00865 7.18773 7.22363 7.30290 7.58823 7.82597 8.03219 8.16901 8.43701 8.65982 9.06535 9.32432 10.27585 Molecular weight = 167.10amu Principal moments of inertia in cm(-1) A = 0.081680 B = 0.015776 C = 0.014593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 342.719104 B = 1774.399055 C = 1918.240496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.541 5.541 3 C 0.128 3.872 4 C -0.445 4.445 5 C 0.089 3.911 6 C -0.471 4.471 7 H 0.070 0.930 8 C 0.075 3.925 9 N -0.812 5.812 10 Si 0.906 3.094 11 H -0.270 1.270 12 H -0.280 1.280 13 H -0.264 1.264 14 C -0.092 4.092 15 C 0.047 3.953 16 H 0.047 0.953 17 H 0.050 0.950 18 H 0.051 0.949 19 H 0.041 0.959 20 H 0.043 0.957 21 H 0.071 0.929 22 H 0.276 0.724 23 H 0.086 0.914 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.274 -1.723 1.197 2.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.263 5.263 3 C 0.000 4.000 4 C -0.468 4.468 5 C 0.087 3.913 6 C -0.501 4.501 7 H 0.088 0.912 8 C -0.141 4.141 9 N -0.439 5.439 10 Si 0.731 3.269 11 H -0.195 1.195 12 H -0.205 1.205 13 H -0.188 1.188 14 C -0.130 4.130 15 C -0.082 4.082 16 H 0.065 0.935 17 H 0.069 0.931 18 H 0.069 0.931 19 H 0.059 0.941 20 H 0.061 0.939 21 H 0.090 0.910 22 H 0.087 0.913 23 H 0.104 0.896 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.280 -2.140 1.521 2.640 hybrid contribution -0.262 0.818 -1.738 1.938 sum 0.019 -1.321 -0.216 1.339 Atomic orbital electron populations 1.22276 0.88926 1.00139 1.01107 1.62850 1.07601 1.14932 1.40959 1.20339 0.96917 0.86806 0.95904 1.22045 1.33453 0.97150 0.94125 1.18086 0.88781 0.92093 0.92390 1.19490 1.34048 1.00330 0.96260 0.91198 1.25998 0.92788 0.94218 1.01062 1.69788 1.24002 1.16935 1.33219 0.86358 0.78329 0.80439 0.81794 1.19501 1.20488 1.18821 1.20914 1.01945 0.95071 0.95104 1.22296 0.98960 0.96439 0.90488 0.93456 0.93143 0.93059 0.94088 0.93870 0.91040 0.91260 0.89564 0.92488 0.92585 0.92288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.50 8.89 60.06 0.53 1.03 15 2 N -0.54 -11.79 5.27 -244.47 -1.29 -13.08 15 3 C 0.13 2.90 5.94 -5.25 -0.03 2.87 15 4 C -0.44 -11.62 9.25 -36.00 -0.33 -11.95 15 5 C 0.09 2.41 4.94 -105.56 -0.52 1.89 15 6 C -0.47 -13.15 8.90 -38.12 -0.34 -13.49 15 7 H 0.07 1.96 7.88 -52.49 -0.41 1.54 15 8 C 0.08 1.95 5.18 -17.26 -0.09 1.86 15 9 N -0.81 -21.11 10.39 55.57 0.58 -20.53 15 10 Si 0.91 19.50 29.59 -169.99 -5.03 14.47 15 11 H -0.27 -5.72 7.11 56.52 0.40 -5.32 15 12 H -0.28 -5.85 7.11 56.52 0.40 -5.45 15 13 H -0.26 -5.70 7.11 56.52 0.40 -5.30 15 14 C -0.09 -2.28 3.51 -28.01 -0.10 -2.38 15 15 C 0.05 1.02 6.05 -3.65 -0.02 0.99 15 16 H 0.05 1.11 5.60 -51.93 -0.29 0.82 15 17 H 0.05 0.93 8.14 -51.93 -0.42 0.51 15 18 H 0.05 0.96 8.03 -51.93 -0.42 0.54 15 19 H 0.04 0.90 8.14 -51.93 -0.42 0.48 15 20 H 0.04 0.92 7.97 -51.93 -0.41 0.51 15 21 H 0.07 1.92 7.98 -52.49 -0.42 1.50 15 22 H 0.28 6.59 8.29 -40.82 -0.34 6.26 15 23 H 0.09 2.24 5.76 -51.93 -0.30 1.94 15 24 H 0.06 1.46 7.59 -51.93 -0.39 1.07 15 25 H 0.06 1.10 8.14 -51.93 -0.42 0.68 15 26 H 0.06 1.27 8.07 -51.93 -0.42 0.85 15 LS Contribution 210.83 15.07 3.18 3.18 Total: -1.00 -27.57 210.83 -6.93 -34.50 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -3.47 Total: 0.63 kcal Atomic # 6 Polarization: -18.27 SS G_CDS: -0.90 Total: -19.17 kcal Atomic # 7 Polarization: -32.90 SS G_CDS: -0.71 Total: -33.61 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.03 Total: 14.47 kcal Total LS contribution 3.18 Total: 3.18 kcal Total: -27.57 -6.93 -34.50 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000144025840.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.294 kcal (2) G-P(sol) polarization free energy of solvation -27.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds