Wall clock time and date at job start Mon Mar 30 2020 02:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46819 * 111.00016 * 2 1 4 4 C 1.50217 * 110.21010 * 288.09507 * 3 2 1 5 5 C 1.34082 * 122.69762 * 342.72244 * 4 3 2 6 6 C 1.40069 * 118.82240 * 180.51353 * 5 4 3 7 7 H 1.07998 * 120.00416 * 17.15208 * 6 5 4 8 8 C 1.40313 * 119.99665 * 197.15364 * 6 5 4 9 9 N 1.30684 * 119.99917 * 15.43508 * 8 6 5 10 10 Si 1.86803 * 119.99934 * 195.43569 * 8 6 5 11 11 H 1.48493 * 109.47044 * 90.00071 * 10 8 6 12 12 H 1.48501 * 109.46946 * 210.00067 * 10 8 6 13 13 H 1.48497 * 109.46953 * 329.99623 * 10 8 6 14 14 C 1.50372 * 122.34818 * 0.53341 * 5 4 3 15 15 C 1.47157 * 110.98551 * 236.85697 * 2 1 3 16 16 H 1.09004 * 109.47005 * 63.95731 * 1 2 3 17 17 H 1.08998 * 109.47130 * 183.95372 * 1 2 3 18 18 H 1.08998 * 109.47042 * 303.95709 * 1 2 3 19 19 H 1.09003 * 109.34499 * 167.86712 * 3 2 1 20 20 H 1.08998 * 109.22554 * 48.24757 * 3 2 1 21 21 H 1.07995 * 118.65053 * 162.74279 * 4 3 2 22 22 H 0.97005 * 120.00018 * 179.97438 * 9 8 6 23 23 H 1.09000 * 109.43628 * 103.32691 * 14 5 4 24 24 H 1.08994 * 109.43676 * 223.20340 * 14 5 4 25 25 H 1.09001 * 109.61484 * 293.74392 * 15 2 1 26 26 H 1.09001 * 109.59519 * 173.23760 * 15 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3707 0.0000 4 6 1.7724 2.0121 -1.3400 5 6 1.4921 1.3047 -2.4440 6 6 1.3101 1.9858 -3.6543 7 1 1.6588 3.0024 -3.7596 8 6 0.6746 1.3471 -4.7300 9 7 -0.0093 0.2520 -4.5280 10 14 0.8062 2.0622 -6.4507 11 1 1.9933 1.4900 -7.1350 12 1 -0.4185 1.7273 -7.2209 13 1 0.9482 3.5378 -6.3638 14 6 1.3657 -0.1937 -2.4290 15 6 1.9960 -0.7512 -1.1504 16 1 -0.3633 0.4512 -0.9234 17 1 -0.3633 -1.0252 0.0709 18 1 -0.3633 0.5740 0.8524 19 1 3.0633 1.3474 0.2162 20 1 1.4840 1.9514 0.7678 21 1 1.8411 3.0870 -1.4173 22 1 -0.4490 -0.1894 -5.2716 23 1 0.3116 -0.4691 -2.4637 24 1 1.8774 -0.6095 -3.2969 25 1 1.7411 -1.8059 -1.0466 26 1 3.0790 -0.6369 -1.1965 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000144025840.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:33 Heat of formation + Delta-G solvation = -9.173795 kcal Electronic energy + Delta-G solvation = -9771.681530 eV Core-core repulsion = 8042.321045 eV Total energy + Delta-G solvation = -1729.360485 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 167.101 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.96869 -36.06077 -32.83367 -31.24803 -28.82563 -26.68164 -23.99256 -22.63438 -19.61946 -17.94289 -17.03762 -16.28562 -15.76683 -15.14694 -14.73568 -14.21706 -13.64288 -13.42293 -13.10231 -12.69438 -12.53602 -12.47919 -12.27496 -12.01544 -11.57605 -11.11543 -11.07936 -9.48593 -9.14880 -8.48202 -6.35765 1.21575 1.34081 1.46092 1.91421 2.19358 3.19059 3.37805 4.27858 4.39863 4.60779 4.67853 4.83010 4.88617 5.00379 5.12055 5.13342 5.22901 5.26186 5.30925 5.58368 5.84827 6.14792 6.27058 6.45647 6.60990 6.99375 7.27760 8.31117 Molecular weight = 167.10amu Principal moments of inertia in cm(-1) A = 0.081680 B = 0.015776 C = 0.014593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 342.719104 B = 1774.399055 C = 1918.240496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.533 5.533 3 C 0.130 3.870 4 C -0.454 4.454 5 C 0.062 3.938 6 C -0.515 4.515 7 H 0.053 0.947 8 C 0.038 3.962 9 N -0.827 5.827 10 Si 0.978 3.022 11 H -0.260 1.260 12 H -0.263 1.263 13 H -0.268 1.268 14 C -0.077 4.077 15 C 0.050 3.950 16 H 0.012 0.988 17 H 0.073 0.927 18 H 0.069 0.931 19 H 0.052 0.948 20 H 0.057 0.943 21 H 0.051 0.949 22 H 0.287 0.713 23 H 0.072 0.928 24 H 0.041 0.959 25 H 0.083 0.917 26 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.161 -2.485 1.051 2.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.256 5.256 3 C 0.002 3.998 4 C -0.477 4.477 5 C 0.060 3.940 6 C -0.545 4.545 7 H 0.072 0.928 8 C -0.176 4.176 9 N -0.454 5.454 10 Si 0.799 3.201 11 H -0.185 1.185 12 H -0.188 1.188 13 H -0.192 1.192 14 C -0.116 4.116 15 C -0.078 4.078 16 H 0.030 0.970 17 H 0.092 0.908 18 H 0.088 0.912 19 H 0.070 0.930 20 H 0.076 0.924 21 H 0.069 0.931 22 H 0.098 0.902 23 H 0.091 0.909 24 H 0.060 0.940 25 H 0.101 0.899 26 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.163 -2.915 1.399 3.237 hybrid contribution -0.263 1.068 -1.670 2.000 sum -0.100 -1.847 -0.271 1.869 Atomic orbital electron populations 1.22302 0.88081 1.01657 1.00082 1.62918 1.08268 1.14011 1.40366 1.20346 0.97879 0.87388 0.94142 1.22274 1.33210 0.96331 0.95862 1.18474 0.89206 0.93659 0.92645 1.19694 1.36317 1.00319 0.98219 0.92834 1.26756 0.91701 0.94554 1.04623 1.69817 1.23358 1.17375 1.34863 0.85276 0.79094 0.79240 0.76502 1.18499 1.18779 1.19236 1.20731 1.01108 0.93514 0.96215 1.22316 0.98934 0.97703 0.88850 0.96960 0.90800 0.91207 0.93012 0.92430 0.93096 0.90168 0.90935 0.94030 0.89860 0.91976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.07 8.89 127.69 1.14 2.21 15 2 N -0.53 -22.13 5.27 -927.38 -4.89 -27.02 15 3 C 0.13 5.74 5.94 85.42 0.51 6.25 15 4 C -0.45 -24.03 9.25 24.59 0.23 -23.81 15 5 C 0.06 3.45 4.94 -20.47 -0.10 3.35 15 6 C -0.52 -29.53 8.90 23.22 0.21 -29.32 15 7 H 0.05 3.12 7.88 -2.91 -0.02 3.10 15 8 C 0.04 1.99 5.18 85.37 0.44 2.43 15 9 N -0.83 -42.83 10.39 21.89 0.23 -42.60 15 10 Si 0.98 39.70 29.59 68.60 2.03 41.73 15 11 H -0.26 -10.16 7.11 99.48 0.71 -9.45 15 12 H -0.26 -9.97 7.11 99.48 0.71 -9.26 15 13 H -0.27 -10.97 7.11 99.48 0.71 -10.26 15 14 C -0.08 -3.83 3.51 29.77 0.10 -3.72 15 15 C 0.05 2.11 6.05 86.28 0.52 2.63 15 16 H 0.01 0.55 5.60 -2.38 -0.01 0.54 15 17 H 0.07 2.53 8.14 -2.39 -0.02 2.51 15 18 H 0.07 2.45 8.03 -2.39 -0.02 2.43 15 19 H 0.05 2.18 8.14 -2.39 -0.02 2.16 15 20 H 0.06 2.36 7.97 -2.39 -0.02 2.34 15 21 H 0.05 2.83 7.98 -2.91 -0.02 2.80 15 22 H 0.29 13.43 8.29 -92.70 -0.77 12.66 15 23 H 0.07 3.78 5.76 -2.39 -0.01 3.77 15 24 H 0.04 2.14 7.59 -2.39 -0.02 2.12 15 25 H 0.08 3.04 8.14 -2.39 -0.02 3.02 15 26 H 0.06 2.56 8.07 -2.39 -0.02 2.54 15 Total: -1.00 -58.42 210.83 1.56 -56.86 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: 1.14 Total: 11.01 kcal Atomic # 6 Polarization: -43.02 SS G_CDS: 3.04 Total: -39.98 kcal Atomic # 7 Polarization: -64.96 SS G_CDS: -4.66 Total: -69.62 kcal Atomic # 14 Polarization: 39.70 SS G_CDS: 2.03 Total: 41.73 kcal Total: -58.42 1.56 -56.86 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000144025840.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.689 kcal (2) G-P(sol) polarization free energy of solvation -58.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds