Wall clock time and date at job start Mon Mar 30 2020 02:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.32574 * 124.55143 * 2 1 4 4 C 1.44755 * 113.16013 * 179.74540 * 3 2 1 5 5 C 1.41262 * 123.64756 * 180.20857 * 4 3 2 6 6 H 1.08000 * 120.00454 * 159.59133 * 5 4 3 7 7 C 1.39689 * 119.99730 * 339.59061 * 5 4 3 8 8 N 1.31060 * 120.00185 * 349.03697 * 7 5 4 9 9 Si 1.86799 * 119.99999 * 169.02784 * 7 5 4 10 10 H 1.48500 * 109.47136 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46932 * 120.00229 * 9 7 5 12 12 H 1.48503 * 109.47336 * 240.00107 * 9 7 5 13 13 C 1.37496 * 112.71068 * 0.23073 * 4 3 2 14 14 S 1.70432 * 110.66110 * 0.02562 * 13 4 3 15 15 H 1.08996 * 109.46869 * 90.00422 * 1 2 3 16 16 H 1.08999 * 109.46622 * 210.00030 * 1 2 3 17 17 H 1.09004 * 109.46993 * 330.00134 * 1 2 3 18 18 H 1.07994 * 123.42468 * 0.02562 * 3 2 1 19 19 H 0.97002 * 119.99851 * 179.97438 * 8 7 5 20 20 H 1.07999 * 124.66753 * 180.02562 * 13 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2589 1.0919 0.0000 4 6 3.6780 0.8060 0.0059 5 6 4.6775 1.8042 0.0113 6 1 5.6776 1.5653 0.3416 7 6 4.3723 3.1004 -0.4105 8 7 3.2323 3.3432 -1.0098 9 14 5.5890 4.4879 -0.1204 10 1 6.7913 3.9556 0.5698 11 1 5.9873 5.0776 -1.4238 12 1 4.9557 5.5333 0.7230 13 6 3.9479 -0.5422 0.0052 14 16 2.5022 -1.4449 -0.0033 15 1 -0.3633 -0.0001 -1.0276 16 1 -0.3632 -0.8900 0.5138 17 1 -0.3633 0.8900 0.5138 18 1 1.8540 2.0930 0.0004 19 1 3.0202 4.2434 -1.3024 20 1 4.9394 -0.9702 0.0094 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000146400102.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:45 Heat of formation + Delta-G solvation = -9.301160 kcal Electronic energy + Delta-G solvation = -7429.333754 eV Core-core repulsion = 5909.168861 eV Total energy + Delta-G solvation = -1520.164893 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 168.030 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -38.25117 -34.98123 -32.47688 -28.27597 -26.73873 -22.68375 -20.24196 -18.80120 -17.02257 -16.77849 -15.34600 -14.51916 -14.15841 -13.60790 -13.45393 -13.16892 -13.02866 -12.58271 -12.40589 -12.01868 -11.71811 -11.27366 -10.90610 -9.18065 -8.88823 -8.61693 -6.31902 0.69658 1.35834 1.37882 1.38609 1.53287 1.94563 2.17874 2.25192 3.32087 4.28844 4.65585 4.83417 4.87701 5.12228 5.17639 5.42944 5.64090 5.71185 6.05707 6.42865 6.79659 6.93836 8.35684 Molecular weight = 168.03amu Principal moments of inertia in cm(-1) A = 0.082973 B = 0.015777 C = 0.013574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 337.380076 B = 1774.274814 C = 2062.307936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.207 4.207 3 C -0.131 4.131 4 C 0.061 3.939 5 C -0.485 4.485 6 H 0.068 0.932 7 C 0.033 3.967 8 N -0.836 5.836 9 Si 0.992 3.008 10 H -0.263 1.263 11 H -0.264 1.264 12 H -0.260 1.260 13 C -0.461 4.461 14 S 0.048 5.952 15 H 0.074 0.926 16 H 0.079 0.921 17 H 0.074 0.926 18 H 0.137 0.863 19 H 0.289 0.711 20 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.234 -0.119 1.222 3.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.323 4.323 3 C -0.164 4.164 4 C 0.051 3.949 5 C -0.518 4.518 6 H 0.087 0.913 7 C -0.180 4.180 8 N -0.464 5.464 9 Si 0.812 3.188 10 H -0.187 1.187 11 H -0.189 1.189 12 H -0.184 1.184 13 C -0.596 4.596 14 S 0.308 5.692 15 H 0.093 0.907 16 H 0.098 0.902 17 H 0.093 0.907 18 H 0.155 0.845 19 H 0.099 0.901 20 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.653 -1.477 1.104 4.092 hybrid contribution 1.219 2.019 -0.028 2.359 sum -2.434 0.541 1.076 2.716 Atomic orbital electron populations 1.20304 0.86368 1.03197 1.02760 1.24578 1.00751 0.95922 1.11050 1.21668 0.93168 0.98821 1.02696 1.18376 0.93189 0.91976 0.91405 1.19413 0.97101 0.94622 1.40695 0.91350 1.26785 0.97959 1.01865 0.91422 1.69889 1.23726 1.23726 1.29055 0.85019 0.78113 0.76549 0.79104 1.18688 1.18892 1.18415 1.24312 1.00250 0.97197 1.37841 1.81248 0.96678 1.10363 1.80953 0.90704 0.90227 0.90682 0.84531 0.90093 0.86297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.28 10.34 71.24 0.74 -1.54 14 2 C -0.21 -9.48 6.42 24.53 0.16 -9.33 14 3 C -0.13 -7.00 8.98 22.78 0.20 -6.80 14 4 C 0.06 3.54 5.68 -21.05 -0.12 3.42 14 5 C -0.48 -27.85 9.24 23.36 0.22 -27.63 14 6 H 0.07 3.86 7.87 -2.91 -0.02 3.84 14 7 C 0.03 1.74 5.38 85.16 0.46 2.19 14 8 N -0.84 -44.18 10.72 21.79 0.23 -43.95 14 9 Si 0.99 39.31 29.57 68.60 2.03 41.34 14 10 H -0.26 -10.37 7.11 99.48 0.71 -9.66 14 11 H -0.26 -9.96 7.11 99.48 0.71 -9.26 14 12 H -0.26 -9.68 7.11 99.48 0.71 -8.97 14 13 C -0.46 -25.06 10.86 67.64 0.73 -24.32 14 14 S 0.05 2.20 22.98 -56.49 -1.30 0.90 14 15 H 0.07 2.32 8.14 -2.39 -0.02 2.30 14 16 H 0.08 2.28 8.14 -2.39 -0.02 2.26 14 17 H 0.07 2.35 8.14 -2.38 -0.02 2.33 14 18 H 0.14 7.42 6.28 -2.91 -0.02 7.40 14 19 H 0.29 13.60 8.30 -92.71 -0.77 12.83 14 20 H 0.12 6.36 8.06 -2.91 -0.02 6.34 14 Total: -1.00 -60.90 196.43 4.58 -56.32 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: 1.23 Total: 9.40 kcal Atomic # 6 Polarization: -66.40 SS G_CDS: 2.39 Total: -64.01 kcal Atomic # 7 Polarization: -44.18 SS G_CDS: 0.23 Total: -43.95 kcal Atomic # 14 Polarization: 39.31 SS G_CDS: 2.03 Total: 41.34 kcal Atomic # 16 Polarization: 2.20 SS G_CDS: -1.30 Total: 0.90 kcal Total: -60.90 4.58 -56.32 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000146400102.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.015 kcal (2) G-P(sol) polarization free energy of solvation -60.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds