Wall clock time and date at job start Mon Mar 30 2020 02:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50697 * 109.46992 * 2 1 4 4 N 1.30731 * 126.41102 * 270.02724 * 3 2 1 5 5 N 1.28411 * 110.68190 * 179.97438 * 4 3 2 6 6 N 1.28940 * 110.31329 * 359.70325 * 5 4 3 7 7 N 1.35567 * 126.40648 * 90.00112 * 3 2 1 8 8 C 1.37615 * 127.42791 * 0.02699 * 7 3 2 9 9 H 1.08002 * 119.99589 * 359.97438 * 8 7 3 10 10 C 1.39017 * 119.99845 * 180.27552 * 8 7 3 11 11 N 1.31234 * 120.00231 * 359.71900 * 10 8 7 12 12 Si 1.86801 * 119.99725 * 179.71963 * 10 8 7 13 13 H 1.48504 * 109.47266 * 60.00157 * 12 10 8 14 14 H 1.48504 * 109.46970 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.47383 * 299.99563 * 12 10 8 16 16 H 1.09001 * 109.47652 * 60.00050 * 1 2 3 17 17 H 1.09000 * 109.46951 * 179.97438 * 1 2 3 18 18 H 1.08995 * 109.47224 * 299.99519 * 1 2 3 19 19 H 1.09004 * 109.47019 * 240.00634 * 2 1 3 20 20 H 1.08999 * 109.47465 * 120.00707 * 2 1 3 21 21 H 0.97004 * 119.99649 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.2904 2.1526 -1.0521 5 7 2.7020 3.3180 -0.7040 6 7 2.7307 3.4172 0.5813 7 7 2.3004 2.1794 1.0911 8 6 2.1732 1.8180 2.4128 9 1 1.8238 0.8292 2.6710 10 6 2.4886 2.7277 3.4156 11 7 2.9129 3.9292 3.1018 12 14 2.3085 2.2397 5.2097 13 1 3.1822 1.0734 5.4956 14 1 2.7061 3.3792 6.0749 15 1 0.8947 1.8784 5.4849 16 1 -0.3634 0.5138 -0.8900 17 1 -0.3633 -1.0277 -0.0005 18 1 -0.3633 0.5137 0.8900 19 1 1.8933 -0.5138 -0.8901 20 1 1.8933 -0.5139 0.8899 21 1 3.1333 4.5638 3.8016 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000149701428.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:29 Heat of formation + Delta-G solvation = 91.667946 kcal Electronic energy + Delta-G solvation = -9463.942830 eV Core-core repulsion = 7569.988917 eV Total energy + Delta-G solvation = -1893.953913 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 168.071 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -40.96017 -34.64766 -33.42935 -31.44317 -29.21280 -26.12465 -23.46440 -21.90089 -19.72475 -18.03285 -15.70668 -14.75287 -14.51603 -13.95682 -13.64575 -12.23324 -12.02448 -11.93759 -11.55330 -11.45024 -10.88840 -10.66446 -10.49138 -10.35704 -10.10293 -8.99470 -8.89125 -8.27061 -6.95136 -4.80358 2.72231 2.88581 2.94562 3.15995 3.58580 4.02818 4.33227 4.67300 5.42391 5.63473 5.87920 6.12964 6.24406 6.29385 6.60821 6.71039 6.80861 7.22793 7.54541 7.75938 8.36798 8.88078 10.02671 10.51915 Molecular weight = 168.07amu Principal moments of inertia in cm(-1) A = 0.054089 B = 0.019541 C = 0.014956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.543306 B = 1432.533381 C = 1871.697072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.014 4.014 3 C 0.071 3.929 4 N -0.355 5.355 5 N -0.150 5.150 6 N -0.114 5.114 7 N -0.158 5.158 8 C -0.308 4.308 9 H 0.127 0.873 10 C 0.047 3.953 11 N -0.756 5.756 12 Si 0.945 3.055 13 H -0.262 1.262 14 H -0.273 1.273 15 H -0.262 1.262 16 H 0.055 0.945 17 H 0.055 0.945 18 H 0.055 0.945 19 H 0.080 0.920 20 H 0.073 0.927 21 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.146 -6.868 3.840 8.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.055 4.055 3 C -0.197 4.197 4 N -0.217 5.217 5 N -0.140 5.140 6 N -0.099 5.099 7 N 0.061 4.939 8 C -0.447 4.447 9 H 0.145 0.855 10 C -0.174 4.174 11 N -0.383 5.383 12 Si 0.767 3.233 13 H -0.186 1.186 14 H -0.197 1.197 15 H -0.186 1.186 16 H 0.075 0.925 17 H 0.074 0.926 18 H 0.074 0.926 19 H 0.098 0.902 20 H 0.092 0.908 21 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.628 -5.415 3.148 6.793 hybrid contribution -0.273 -0.772 1.559 1.761 sum -2.901 -6.187 4.708 8.298 Atomic orbital electron populations 1.21714 0.95132 1.00940 1.02414 1.19570 0.95445 0.87774 1.02676 1.24554 1.12932 0.98460 0.83771 1.73705 1.21316 1.00278 1.26372 1.77587 1.17387 1.11958 1.07088 1.82989 1.25002 1.00057 1.01846 1.47547 1.31518 1.07981 1.06812 1.20192 1.45694 1.01467 0.77353 0.85531 1.25838 0.94665 0.94650 1.02254 1.70115 1.28497 1.03853 1.35810 0.85713 0.79874 0.79128 0.78582 1.18615 1.19708 1.18616 0.92542 0.92603 0.92576 0.90186 0.90810 0.90304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.89 37.15 0.37 -1.96 14 2 C -0.01 -0.26 6.23 -27.89 -0.17 -0.43 14 3 C 0.07 1.77 7.37 -154.74 -1.14 0.63 14 4 N -0.35 -9.74 12.15 32.84 0.40 -9.34 14 5 N -0.15 -4.43 13.38 60.35 0.81 -3.62 14 6 N -0.11 -3.45 11.90 60.35 0.72 -2.73 14 7 N -0.16 -4.36 3.77 -8.88 -0.03 -4.40 14 8 C -0.31 -7.75 10.05 -14.67 -0.15 -7.89 14 9 H 0.13 2.75 7.23 -52.49 -0.38 2.37 14 10 C 0.05 1.13 5.50 -17.52 -0.10 1.04 14 11 N -0.76 -20.12 11.93 55.50 0.66 -19.46 14 12 Si 0.94 17.46 29.55 -169.99 -5.02 12.44 14 13 H -0.26 -4.67 7.11 56.52 0.40 -4.27 14 14 H -0.27 -4.99 7.11 56.52 0.40 -4.59 14 15 H -0.26 -4.67 7.11 56.52 0.40 -4.27 14 16 H 0.06 0.95 8.14 -51.93 -0.42 0.53 14 17 H 0.05 0.71 8.14 -51.93 -0.42 0.29 14 18 H 0.06 0.96 8.14 -51.93 -0.42 0.54 14 19 H 0.08 1.34 8.14 -51.93 -0.42 0.92 14 20 H 0.07 1.25 7.51 -51.93 -0.39 0.86 14 21 H 0.29 6.85 8.30 -40.82 -0.34 6.51 14 LS Contribution 198.67 15.07 2.99 2.99 Total: -1.00 -31.57 198.67 -2.26 -33.83 By element: Atomic # 1 Polarization: 0.49 SS G_CDS: -1.59 Total: -1.10 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: -1.19 Total: -8.61 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: 2.55 Total: -39.55 kcal Atomic # 14 Polarization: 17.46 SS G_CDS: -5.02 Total: 12.44 kcal Total LS contribution 2.99 Total: 2.99 kcal Total: -31.57 -2.26 -33.83 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000149701428.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.497 kcal (2) G-P(sol) polarization free energy of solvation -31.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds