Wall clock time and date at job start Mon Mar 30 2020 02:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50697 * 109.46992 * 2 1 4 4 N 1.30731 * 126.41102 * 270.02724 * 3 2 1 5 5 N 1.28411 * 110.68190 * 179.97438 * 4 3 2 6 6 N 1.28940 * 110.31329 * 359.70325 * 5 4 3 7 7 N 1.35567 * 126.40648 * 90.00112 * 3 2 1 8 8 C 1.37615 * 127.42791 * 0.02699 * 7 3 2 9 9 H 1.08002 * 119.99589 * 359.97438 * 8 7 3 10 10 C 1.39017 * 119.99845 * 180.27552 * 8 7 3 11 11 N 1.31234 * 120.00231 * 359.71900 * 10 8 7 12 12 Si 1.86801 * 119.99725 * 179.71963 * 10 8 7 13 13 H 1.48504 * 109.47266 * 60.00157 * 12 10 8 14 14 H 1.48504 * 109.46970 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.47383 * 299.99563 * 12 10 8 16 16 H 1.09001 * 109.47652 * 60.00050 * 1 2 3 17 17 H 1.09000 * 109.46951 * 179.97438 * 1 2 3 18 18 H 1.08995 * 109.47224 * 299.99519 * 1 2 3 19 19 H 1.09004 * 109.47019 * 240.00634 * 2 1 3 20 20 H 1.08999 * 109.47465 * 120.00707 * 2 1 3 21 21 H 0.97004 * 119.99649 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.2904 2.1526 -1.0521 5 7 2.7020 3.3180 -0.7040 6 7 2.7307 3.4172 0.5813 7 7 2.3004 2.1794 1.0911 8 6 2.1732 1.8180 2.4128 9 1 1.8238 0.8292 2.6710 10 6 2.4886 2.7277 3.4156 11 7 2.9129 3.9292 3.1018 12 14 2.3085 2.2397 5.2097 13 1 3.1822 1.0734 5.4956 14 1 2.7061 3.3792 6.0749 15 1 0.8947 1.8784 5.4849 16 1 -0.3634 0.5138 -0.8900 17 1 -0.3633 -1.0277 -0.0005 18 1 -0.3633 0.5137 0.8900 19 1 1.8933 -0.5138 -0.8901 20 1 1.8933 -0.5139 0.8899 21 1 3.1333 4.5638 3.8016 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000149701428.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:29 Heat of formation + Delta-G solvation = 69.290214 kcal Electronic energy + Delta-G solvation = -9464.913201 eV Core-core repulsion = 7569.988917 eV Total energy + Delta-G solvation = -1894.924284 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 168.071 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -43.01119 -36.59074 -35.08319 -33.40455 -31.10427 -28.09224 -25.04515 -23.95200 -21.60067 -19.99256 -17.60551 -16.74036 -16.11997 -15.67667 -15.17053 -13.94617 -13.80438 -13.50127 -13.22592 -13.08442 -12.37529 -12.33710 -12.11483 -12.10324 -11.79411 -11.09100 -10.79177 -10.34590 -8.80684 -6.79077 0.87483 1.37421 1.58372 1.59900 1.94487 1.99697 2.47040 2.82850 3.79872 4.14634 4.48719 4.52296 4.69011 4.93333 5.04162 5.07599 5.36095 5.42997 5.48295 5.84362 6.45433 6.93467 8.20248 8.41769 Molecular weight = 168.07amu Principal moments of inertia in cm(-1) A = 0.054089 B = 0.019541 C = 0.014956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.543306 B = 1432.533381 C = 1871.697072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.014 4.014 3 C 0.064 3.936 4 N -0.370 5.370 5 N -0.181 5.181 6 N -0.164 5.164 7 N -0.170 5.170 8 C -0.324 4.324 9 H 0.162 0.838 10 C -0.003 4.003 11 N -0.804 5.804 12 Si 1.032 2.968 13 H -0.245 1.245 14 H -0.274 1.274 15 H -0.245 1.245 16 H 0.042 0.958 17 H 0.100 0.900 18 H 0.042 0.958 19 H 0.099 0.901 20 H 0.095 0.905 21 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.974 -9.152 5.749 11.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.055 4.055 3 C -0.204 4.204 4 N -0.232 5.232 5 N -0.171 5.171 6 N -0.149 5.149 7 N 0.049 4.951 8 C -0.463 4.463 9 H 0.180 0.820 10 C -0.219 4.219 11 N -0.431 5.431 12 Si 0.848 3.152 13 H -0.168 1.168 14 H -0.198 1.198 15 H -0.169 1.169 16 H 0.062 0.938 17 H 0.119 0.881 18 H 0.061 0.939 19 H 0.117 0.883 20 H 0.113 0.887 21 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.458 -7.699 4.995 9.807 hybrid contribution -0.025 -0.102 0.998 1.003 sum -3.483 -7.801 5.992 10.435 Atomic orbital electron populations 1.21675 0.93166 1.03439 1.01135 1.19930 0.96967 0.83913 1.04664 1.25724 1.11764 1.00370 0.82495 1.73583 1.21565 1.00185 1.27879 1.77513 1.19164 1.13195 1.07259 1.82894 1.27622 1.02256 1.02124 1.47874 1.31337 1.07630 1.08220 1.21238 1.45044 1.03252 0.76736 0.82044 1.27272 0.92981 0.93951 1.07689 1.70267 1.29125 1.05604 1.38119 0.84458 0.80827 0.79038 0.70857 1.16829 1.19818 1.16868 0.93850 0.88136 0.93859 0.88257 0.88672 0.89665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.99 9.89 71.98 0.71 -3.28 14 2 C -0.01 -0.49 6.23 29.85 0.19 -0.30 14 3 C 0.06 3.17 7.37 137.89 1.02 4.19 14 4 N -0.37 -20.64 12.15 -50.01 -0.61 -21.24 14 5 N -0.18 -11.10 13.38 37.02 0.50 -10.61 14 6 N -0.16 -10.24 11.90 37.02 0.44 -9.80 14 7 N -0.17 -9.42 3.77 -182.00 -0.69 -10.10 14 8 C -0.32 -15.77 10.05 83.97 0.84 -14.92 14 9 H 0.16 6.46 7.23 -2.91 -0.02 6.44 14 10 C 0.00 -0.13 5.50 84.97 0.47 0.34 14 11 N -0.80 -43.05 11.93 21.66 0.26 -42.80 14 12 Si 1.03 33.54 29.55 68.60 2.03 35.57 14 13 H -0.24 -7.29 7.11 99.48 0.71 -6.59 14 14 H -0.27 -8.86 7.11 99.48 0.71 -8.15 14 15 H -0.25 -7.32 7.11 99.48 0.71 -6.61 14 16 H 0.04 1.37 8.14 -2.39 -0.02 1.35 14 17 H 0.10 2.08 8.14 -2.39 -0.02 2.06 14 18 H 0.04 1.37 8.14 -2.39 -0.02 1.35 14 19 H 0.10 3.03 8.14 -2.39 -0.02 3.02 14 20 H 0.09 2.87 7.51 -2.39 -0.02 2.85 14 21 H 0.29 14.12 8.30 -92.71 -0.77 13.35 14 Total: -1.00 -70.29 198.67 6.39 -63.90 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: 1.23 Total: 9.06 kcal Atomic # 6 Polarization: -17.20 SS G_CDS: 3.23 Total: -13.98 kcal Atomic # 7 Polarization: -94.46 SS G_CDS: -0.10 Total: -94.56 kcal Atomic # 14 Polarization: 33.54 SS G_CDS: 2.03 Total: 35.57 kcal Total: -70.29 6.39 -63.90 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000149701428.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.194 kcal (2) G-P(sol) polarization free energy of solvation -70.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds