Wall clock time and date at job start Mon Mar 30 2020 02:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48494 * 109.47288 * 240.00094 * 3 2 1 5 5 H 1.48503 * 109.47086 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46819 * 119.99748 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47106 * 180.02562 * 9 7 2 11 11 N 1.39150 * 124.44207 * 270.02084 * 10 9 7 12 12 C 1.27564 * 113.16759 * 180.02562 * 11 10 9 13 13 C 1.51437 * 107.16708 * 0.02562 * 12 11 10 14 14 C 1.34959 * 124.43652 * 89.72419 * 10 9 7 15 15 O 1.21299 * 127.50267 * 359.97390 * 14 10 9 16 16 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 17 17 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 18 18 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 19 19 H 1.08002 * 126.41391 * 179.97438 * 12 11 10 20 20 H 1.09005 * 110.60891 * 118.51172 * 13 12 11 21 21 H 1.08998 * 110.60649 * 241.48079 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2030 -3.6126 -0.0015 11 7 2.7156 -4.2100 -1.1489 12 6 3.5279 -5.1614 -0.8993 13 6 3.6265 -5.2813 0.6071 14 6 2.7022 -4.1897 1.1117 15 8 2.4614 -3.9005 2.2649 16 1 -0.4849 0.8401 0.0004 17 1 0.6240 -2.5575 0.8880 18 1 0.6246 -2.5563 -0.8919 19 1 4.0473 -5.7683 -1.6262 20 1 3.2847 -6.2624 0.9371 21 1 4.6479 -5.0976 0.9405 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156178352.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:31 Heat of formation + Delta-G solvation = -8.378854 kcal Electronic energy + Delta-G solvation = -9260.745949 eV Core-core repulsion = 7330.160930 eV Total energy + Delta-G solvation = -1930.585019 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 168.064 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -41.87409 -38.29879 -35.67333 -33.44083 -30.05083 -29.09512 -25.21736 -22.61815 -20.87763 -18.86208 -17.81380 -16.94261 -16.55673 -16.20093 -15.34400 -14.57712 -14.49869 -13.87244 -13.66136 -13.30964 -12.73106 -12.69997 -12.35743 -11.72937 -11.71612 -10.79158 -10.61053 -9.62016 -8.33322 -6.50393 0.88735 1.33496 1.38482 1.46098 1.73625 1.88190 2.34032 2.95551 3.14053 3.51294 4.20626 4.48854 4.81588 4.84951 4.97311 5.35970 5.54928 5.68639 5.86198 6.53923 6.85964 7.10677 7.22497 8.74699 Molecular weight = 168.06amu Principal moments of inertia in cm(-1) A = 0.070974 B = 0.013862 C = 0.013547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 394.418382 B = 2019.476352 C = 2066.333735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.011 3.989 3 Si 0.978 3.022 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.557 4.557 8 H 0.050 0.950 9 C 0.280 3.720 10 N -0.470 5.470 11 N -0.286 5.286 12 C 0.092 3.908 13 C -0.165 4.165 14 C 0.459 3.541 15 O -0.569 6.569 16 H 0.272 0.728 17 H 0.013 0.987 18 H 0.027 0.973 19 H 0.269 0.731 20 H 0.167 0.833 21 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.692 -9.702 -2.929 13.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.189 4.189 3 Si 0.801 3.199 4 H -0.187 1.187 5 H -0.196 1.196 6 H -0.198 1.198 7 C -0.595 4.595 8 H 0.069 0.931 9 C 0.160 3.840 10 N -0.288 5.288 11 N -0.091 5.091 12 C -0.120 4.120 13 C -0.206 4.206 14 C 0.249 3.751 15 O -0.448 6.448 16 H 0.081 0.919 17 H 0.031 0.969 18 H 0.045 0.955 19 H 0.285 0.715 20 H 0.184 0.816 21 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 7.781 -8.735 -2.984 12.073 hybrid contribution 0.170 0.696 0.820 1.089 sum 7.950 -8.039 -2.163 11.512 Atomic orbital electron populations 1.70035 1.07609 1.28827 1.49904 1.25930 0.95980 1.03296 0.93711 0.85317 0.78275 0.77231 0.79088 1.18718 1.19576 1.19809 1.21565 0.93191 0.91734 1.53021 0.93140 1.18790 0.86761 0.82141 0.96340 1.50353 1.42543 1.32776 1.03107 1.74689 1.12130 1.10017 1.12242 1.28050 0.93896 0.93691 0.96327 1.22326 1.02481 0.99909 0.95854 1.22612 0.82460 0.85111 0.84959 1.90662 1.64685 1.69675 1.19752 0.91862 0.96930 0.95469 0.71538 0.81562 0.82343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.94 13.29 21.45 0.28 -56.65 14 2 C 0.01 0.63 5.46 84.65 0.46 1.10 14 3 Si 0.98 45.78 29.54 68.60 2.03 47.80 14 4 H -0.26 -11.70 7.11 99.48 0.71 -10.99 14 5 H -0.27 -12.02 7.11 99.48 0.71 -11.31 14 6 H -0.27 -12.59 7.11 99.48 0.71 -11.88 14 7 C -0.56 -34.01 9.39 25.60 0.24 -33.77 14 8 H 0.05 3.07 7.81 -2.91 -0.02 3.05 14 9 C 0.28 16.33 5.99 85.64 0.51 16.85 14 10 N -0.47 -22.58 3.52 -465.38 -1.64 -24.22 14 11 N -0.29 -10.79 12.02 -50.09 -0.60 -11.39 14 12 C 0.09 2.03 12.47 88.96 1.11 3.14 14 13 C -0.16 -3.91 6.94 29.65 0.21 -3.71 14 14 C 0.46 20.04 8.43 87.94 0.74 20.78 14 15 O -0.57 -29.99 17.82 -3.09 -0.06 -30.04 14 16 H 0.27 15.55 8.31 -92.71 -0.77 14.78 14 17 H 0.01 0.81 8.04 -2.39 -0.02 0.79 14 18 H 0.03 1.64 8.14 -2.39 -0.02 1.62 14 19 H 0.27 2.04 8.06 -2.91 -0.02 2.02 14 20 H 0.17 2.72 8.14 -2.38 -0.02 2.70 14 21 H 0.16 2.87 8.14 -2.39 -0.02 2.85 14 Total: -1.00 -81.00 202.83 4.51 -76.48 By element: Atomic # 1 Polarization: -7.60 SS G_CDS: 1.23 Total: -6.37 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: 3.27 Total: 4.39 kcal Atomic # 7 Polarization: -90.30 SS G_CDS: -1.96 Total: -92.26 kcal Atomic # 8 Polarization: -29.99 SS G_CDS: -0.06 Total: -30.04 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.80 kcal Total: -81.00 4.51 -76.48 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156178352.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.105 kcal (2) G-P(sol) polarization free energy of solvation -80.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds