Wall clock time and date at job start Mon Mar 30 2020 02:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31265 * 1 3 3 Si 1.86802 * 120.00353 * 2 1 4 4 H 1.48500 * 109.47286 * 274.98666 * 3 2 1 5 5 H 1.48506 * 109.46591 * 34.98589 * 3 2 1 6 6 H 1.48501 * 109.46987 * 154.98187 * 3 2 1 7 7 C 1.39006 * 119.99820 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99781 * 185.91226 * 7 2 1 9 9 N 1.37424 * 119.99952 * 5.91300 * 7 2 1 10 10 C 1.35313 * 126.87594 * 174.22944 * 9 7 2 11 11 N 1.30815 * 107.96254 * 179.75883 * 10 9 7 12 12 C 1.33364 * 109.87736 * 0.24330 * 11 10 9 13 13 C 1.50694 * 125.45924 * 180.02562 * 12 11 10 14 14 N 1.46896 * 109.47117 * 89.97319 * 13 12 11 15 15 N 1.30842 * 109.08382 * 359.97438 * 12 11 10 16 16 H 0.97004 * 119.99748 * 359.97438 * 1 2 3 17 17 H 1.07999 * 126.01823 * 0.02562 * 10 9 7 18 18 H 1.08998 * 109.47088 * 209.98003 * 13 12 11 19 19 H 1.09004 * 109.46715 * 329.97391 * 13 12 11 20 20 H 1.00900 * 110.99624 * 56.04833 * 14 13 12 21 21 H 1.00902 * 111.00023 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3127 0.0000 0.0000 3 14 2.2468 1.6177 0.0000 4 1 2.3889 2.1073 -1.3948 5 1 1.5008 2.6199 0.8028 6 1 3.5930 1.4119 0.5921 7 6 2.0076 -1.2039 -0.0005 8 1 3.0833 -1.2064 0.0958 9 7 1.3260 -2.3907 -0.1237 10 6 1.8630 -3.6263 -0.2495 11 7 0.8810 -4.4863 -0.3344 12 6 -0.2880 -3.8473 -0.2729 13 6 -1.6451 -4.4992 -0.3373 14 7 -2.0867 -4.8458 1.0202 15 7 -0.0677 -2.5638 -0.1467 16 1 -0.4850 0.8401 0.0004 17 1 2.9169 -3.8615 -0.2712 18 1 -2.3589 -3.8088 -0.7865 19 1 -1.5851 -5.4041 -0.9420 20 1 -2.0884 -4.0332 1.6183 21 1 -2.9949 -5.2851 1.0039 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162982196.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:55 Heat of formation + Delta-G solvation = 84.001963 kcal Electronic energy + Delta-G solvation = -9299.377522 eV Core-core repulsion = 7405.091187 eV Total energy + Delta-G solvation = -1894.286335 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 168.071 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -40.17498 -34.49119 -33.40849 -30.74100 -29.27536 -25.96181 -24.00135 -20.78728 -19.15681 -17.69485 -15.74658 -15.04551 -14.36004 -14.23910 -13.67660 -13.19111 -12.06171 -11.99008 -11.72328 -11.32533 -11.01237 -10.64135 -9.99310 -9.74879 -8.38587 -8.21312 -8.14559 -7.88969 -6.67233 -4.44675 2.91267 3.01509 3.06408 3.50834 3.77805 4.30055 4.63882 4.95143 5.42663 5.55512 5.96299 6.22464 6.45761 6.75925 7.06616 7.61765 7.68990 7.95885 8.07733 8.32913 8.69519 9.26753 9.96322 10.30589 Molecular weight = 168.07amu Principal moments of inertia in cm(-1) A = 0.083481 B = 0.014689 C = 0.012917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 335.326595 B = 1905.670742 C = 2167.214235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.050 3.950 3 Si 0.936 3.064 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.328 4.328 8 H 0.121 0.879 9 N -0.158 5.158 10 C 0.095 3.905 11 N -0.555 5.555 12 C 0.119 3.881 13 C 0.178 3.822 14 N -0.843 5.843 15 N -0.286 5.286 16 H 0.275 0.725 17 H 0.186 0.814 18 H 0.035 0.965 19 H 0.078 0.922 20 H 0.343 0.657 21 H 0.333 0.667 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.324 0.168 -0.006 0.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.168 4.168 3 Si 0.759 3.241 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.186 1.186 7 C -0.462 4.462 8 H 0.139 0.861 9 N 0.065 4.935 10 C -0.190 4.190 11 N -0.287 5.287 12 C -0.159 4.159 13 C 0.046 3.954 14 N -0.374 5.374 15 N -0.127 5.127 16 H 0.086 0.914 17 H 0.203 0.797 18 H 0.053 0.947 19 H 0.096 0.904 20 H 0.156 0.844 21 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.332 -0.040 0.016 0.335 hybrid contribution 0.004 1.560 -0.156 1.568 sum -0.328 1.521 -0.141 1.562 Atomic orbital electron populations 1.70192 1.06320 1.28122 1.35139 1.25671 0.95683 1.00469 0.94979 0.85791 0.79563 0.79798 0.78915 1.19565 1.20067 1.18618 1.20003 0.92351 0.80922 1.52956 0.86138 1.46360 1.03618 1.06065 1.37434 1.25076 0.99040 0.81909 1.13012 1.69875 0.97581 1.34236 1.27029 1.23539 0.94421 0.89563 1.08389 1.19470 0.88788 0.97276 0.89898 1.58650 1.32784 1.34412 1.11528 1.78674 0.91158 1.14848 1.27986 0.91419 0.79734 0.94688 0.90354 0.84447 0.85475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.15 11.91 55.50 0.66 -20.49 14 2 C 0.05 1.27 5.50 -17.51 -0.10 1.18 14 3 Si 0.94 18.66 29.56 -169.99 -5.02 13.64 14 4 H -0.27 -5.34 7.11 56.52 0.40 -4.94 14 5 H -0.28 -5.44 7.11 56.52 0.40 -5.04 14 6 H -0.26 -4.99 7.11 56.52 0.40 -4.59 14 7 C -0.33 -8.68 10.28 -14.76 -0.15 -8.83 14 8 H 0.12 2.83 7.84 -52.49 -0.41 2.42 14 9 N -0.16 -4.44 3.74 -12.74 -0.05 -4.49 14 10 C 0.10 2.44 12.61 -89.87 -1.13 1.31 14 11 N -0.56 -14.73 11.19 -11.72 -0.13 -14.86 14 12 C 0.12 3.11 7.65 -156.64 -1.20 1.91 14 13 C 0.18 3.71 7.41 -4.98 -0.04 3.67 14 14 N -0.84 -15.54 9.61 -11.41 -0.11 -15.65 14 15 N -0.29 -8.22 10.63 32.46 0.35 -7.87 14 16 H 0.28 6.88 8.31 -40.82 -0.34 6.54 14 17 H 0.19 3.91 8.06 -52.49 -0.42 3.49 14 18 H 0.03 0.69 8.14 -51.93 -0.42 0.27 14 19 H 0.08 1.51 8.14 -51.93 -0.42 1.09 14 20 H 0.34 6.55 8.98 -39.29 -0.35 6.20 14 21 H 0.33 4.77 9.08 -39.29 -0.36 4.42 14 LS Contribution 199.95 15.07 3.01 3.01 Total: -1.00 -32.18 199.95 -5.43 -37.62 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -1.52 Total: 9.85 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: -2.62 Total: -0.77 kcal Atomic # 7 Polarization: -64.07 SS G_CDS: 0.72 Total: -63.35 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.02 Total: 13.64 kcal Total LS contribution 3.01 Total: 3.01 kcal Total: -32.18 -5.43 -37.62 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162982196.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.617 kcal (2) G-P(sol) polarization free energy of solvation -32.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds