Wall clock time and date at job start Mon Mar 30 2020 01:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 119.99901 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99571 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99752 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99745 * 3 2 1 7 7 C 1.38810 * 119.99887 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99976 * 179.97438 * 7 2 1 9 9 N 1.36930 * 120.00182 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00159 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47116 * 180.02562 * 10 9 7 12 12 H 1.09005 * 110.34728 * 304.16483 * 11 10 9 13 13 C 1.51107 * 110.39080 * 66.45150 * 11 10 9 14 14 C 1.30528 * 111.10141 * 135.24818 * 13 11 10 15 15 C 1.51099 * 111.10960 * 0.02562 * 14 13 11 16 16 C 1.54638 * 110.38723 * 181.75535 * 11 10 9 17 17 H 0.96993 * 120.00105 * 180.02562 * 1 2 3 18 18 H 0.97008 * 120.00358 * 359.97438 * 9 7 2 19 19 H 1.08997 * 109.46917 * 299.99942 * 10 9 7 20 20 H 1.08990 * 109.46833 * 59.99931 * 10 9 7 21 21 H 1.07995 * 124.44357 * 315.22921 * 13 11 10 22 22 H 1.08001 * 124.44092 * 179.97438 * 14 13 11 23 23 H 1.08994 * 110.38979 * 102.36872 * 15 14 13 24 24 H 1.08999 * 110.38398 * 224.64339 * 15 14 13 25 25 H 1.08991 * 111.03788 * 334.58760 * 16 11 10 26 26 H 1.09001 * 111.03312 * 98.52003 * 16 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 3.5477 1.4402 0.7001 6 1 1.4476 2.6527 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0639 -4.8196 -0.0001 12 1 0.3810 -4.7349 0.8453 13 6 0.2921 -4.8518 -1.2988 14 6 0.2143 -6.0669 -1.7692 15 6 0.9205 -7.0478 -0.8625 16 6 1.8150 -6.1706 0.0443 17 1 -0.4850 -0.8400 0.0004 18 1 0.3555 -2.3881 0.0005 19 1 2.6847 -3.7145 -0.8894 20 1 2.6847 -3.7145 0.8904 21 1 -0.1387 -3.9835 -1.7750 22 1 -0.2896 -6.3359 -2.6859 23 1 0.1966 -7.5997 -0.2630 24 1 1.5302 -7.7353 -1.4486 25 1 2.8182 -6.0743 -0.3706 26 1 1.8495 -6.5659 1.0595 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000166479500.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:07 Heat of formation + Delta-G solvation = 18.764315 kcal Electronic energy + Delta-G solvation = -9261.466324 eV Core-core repulsion = 7533.317327 eV Total energy + Delta-G solvation = -1728.148997 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 167.101 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -38.53200 -34.60410 -31.32064 -28.84116 -27.91652 -23.94378 -22.18575 -20.24985 -18.22287 -17.20782 -15.68493 -15.32896 -13.93943 -13.67463 -13.20640 -13.06151 -11.72469 -11.56167 -11.47845 -11.00942 -10.82608 -10.67959 -10.45795 -10.38805 -9.96248 -9.12105 -8.82440 -8.57100 -6.93757 -6.06080 -3.04554 2.60583 3.54395 3.59792 3.73730 4.70529 4.90982 4.93975 5.22568 5.53621 5.65180 5.75486 5.87024 5.92032 5.96125 6.10077 6.16465 6.37684 6.44567 6.69297 6.87403 6.91343 7.23639 7.86242 8.80897 9.29370 10.15739 10.31845 11.42981 Molecular weight = 167.10amu Principal moments of inertia in cm(-1) A = 0.110128 B = 0.010447 C = 0.009953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 254.187824 B = 2679.477204 C = 2812.487810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.048 4.048 3 Si 1.084 2.916 4 H -0.296 1.296 5 H -0.295 1.295 6 H -0.288 1.288 7 C -0.330 4.330 8 H 0.064 0.936 9 N -0.744 5.744 10 C 0.167 3.833 11 C -0.082 4.082 12 H 0.080 0.920 13 C -0.129 4.129 14 C -0.197 4.197 15 C -0.095 4.095 16 C -0.118 4.118 17 H 0.255 0.745 18 H 0.367 0.633 19 H 0.020 0.980 20 H 0.020 0.980 21 H 0.124 0.876 22 H 0.118 0.882 23 H 0.068 0.932 24 H 0.063 0.937 25 H 0.071 0.929 26 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.137 -11.202 -1.155 11.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.245 4.245 3 Si 0.915 3.085 4 H -0.223 1.223 5 H -0.222 1.222 6 H -0.214 1.214 7 C -0.461 4.461 8 H 0.082 0.918 9 N -0.390 5.390 10 C 0.040 3.960 11 C -0.100 4.100 12 H 0.098 0.902 13 C -0.147 4.147 14 C -0.215 4.215 15 C -0.132 4.132 16 C -0.156 4.156 17 H 0.066 0.934 18 H 0.200 0.800 19 H 0.038 0.962 20 H 0.038 0.962 21 H 0.142 0.858 22 H 0.136 0.864 23 H 0.086 0.914 24 H 0.082 0.918 25 H 0.090 0.910 26 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.241 -9.542 -1.137 9.867 hybrid contribution -0.140 -1.646 -0.098 1.655 sum 2.102 -11.188 -1.235 11.450 Atomic orbital electron populations 1.70843 1.06034 1.28380 1.54010 1.25783 0.97083 1.00983 1.00631 0.83180 0.73847 0.75279 0.76213 1.22350 1.22181 1.21396 1.20096 0.92072 0.85938 1.48002 0.91792 1.42391 1.04896 1.00999 1.90699 1.20596 0.92962 0.84707 0.97753 1.21306 0.97089 0.95274 0.96339 0.90221 1.23393 0.97560 0.97419 0.96350 1.23154 1.03114 0.95298 0.99930 1.21297 0.97790 0.97431 0.96681 1.22466 0.98892 0.94730 0.99498 0.93429 0.80011 0.96200 0.96247 0.85812 0.86437 0.91380 0.91821 0.91048 0.91286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -30.13 13.70 55.49 0.76 -29.37 15 2 C -0.05 -1.43 5.50 -17.43 -0.10 -1.53 15 3 Si 1.08 26.66 29.92 -169.99 -5.09 21.58 15 4 H -0.30 -7.05 7.11 56.52 0.40 -6.65 15 5 H -0.30 -6.85 7.11 56.52 0.40 -6.45 15 6 H -0.29 -7.11 7.11 56.52 0.40 -6.71 15 7 C -0.33 -9.74 9.99 -15.06 -0.15 -9.89 15 8 H 0.06 1.86 7.83 -52.49 -0.41 1.45 15 9 N -0.74 -19.79 5.43 -59.92 -0.33 -20.11 15 10 C 0.17 3.64 5.60 -4.04 -0.02 3.62 15 11 C -0.08 -1.45 2.98 -90.71 -0.27 -1.72 15 12 H 0.08 1.44 8.14 -51.93 -0.42 1.02 15 13 C -0.13 -2.25 9.73 -35.69 -0.35 -2.60 15 14 C -0.20 -2.90 10.77 -35.70 -0.38 -3.28 15 15 C -0.09 -1.22 6.81 -26.82 -0.18 -1.41 15 16 C -0.12 -1.67 6.71 -25.00 -0.17 -1.84 15 17 H 0.25 7.98 6.77 -40.82 -0.28 7.71 15 18 H 0.37 9.88 6.33 -40.82 -0.26 9.62 15 19 H 0.02 0.45 8.14 -51.93 -0.42 0.03 15 20 H 0.02 0.43 8.14 -51.93 -0.42 0.01 15 21 H 0.12 2.34 8.06 -52.49 -0.42 1.92 15 22 H 0.12 1.51 8.06 -52.49 -0.42 1.09 15 23 H 0.07 0.80 8.14 -51.93 -0.42 0.38 15 24 H 0.06 0.72 8.14 -51.93 -0.42 0.30 15 25 H 0.07 1.00 7.91 -51.93 -0.41 0.59 15 26 H 0.07 0.87 8.14 -51.93 -0.42 0.45 15 LS Contribution 222.28 15.07 3.35 3.35 Total: -1.00 -31.99 222.28 -6.46 -38.45 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -3.53 Total: 4.74 kcal Atomic # 6 Polarization: -17.02 SS G_CDS: -1.62 Total: -18.64 kcal Atomic # 7 Polarization: -49.91 SS G_CDS: 0.43 Total: -49.48 kcal Atomic # 14 Polarization: 26.66 SS G_CDS: -5.09 Total: 21.58 kcal Total LS contribution 3.35 Total: 3.35 kcal Total: -31.99 -6.46 -38.45 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166479500.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.216 kcal (2) G-P(sol) polarization free energy of solvation -31.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds