Wall clock time and date at job start Mon Mar 30 2020 01:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48501 * 109.47213 * 239.99870 * 3 2 1 5 5 H 1.48502 * 109.47317 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47081 * 119.99498 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.52996 * 109.47059 * 179.72430 * 10 9 7 12 12 H 1.09002 * 110.34829 * 54.29485 * 11 10 9 13 13 C 1.51109 * 110.38701 * 292.00723 * 11 10 9 14 14 C 1.30524 * 111.10734 * 224.75081 * 13 11 10 15 15 C 1.51102 * 111.10169 * 0.02562 * 14 13 11 16 16 C 1.54632 * 110.38838 * 176.58535 * 11 10 9 17 17 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 18 18 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 19 19 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 20 20 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 21 21 H 1.08005 * 124.44301 * 44.73494 * 13 11 10 22 22 H 1.08003 * 124.44838 * 180.02562 * 14 13 11 23 23 H 1.09003 * 110.38647 * 135.24805 * 15 14 13 24 24 H 1.09004 * 110.38762 * 257.62094 * 15 14 13 25 25 H 1.08999 * 111.04005 * 261.47273 * 16 11 10 26 26 H 1.09000 * 111.03752 * 25.41387 * 16 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7465 -0.0006 6 1 3.1039 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 6 1.0637 -4.8197 0.0127 12 1 0.3644 -4.7243 -0.8180 13 6 0.3176 -4.8682 1.3259 14 6 0.2487 -6.0890 1.7825 15 6 0.9378 -7.0582 0.8503 16 6 1.8133 -6.1698 -0.0665 17 1 -0.4850 0.8401 -0.0004 18 1 0.3555 -2.3880 0.0005 19 1 2.6849 -3.7190 -0.8822 20 1 2.6842 -3.7101 0.8977 21 1 -0.1031 -4.0058 1.8217 22 1 -0.2371 -6.3696 2.7054 23 1 1.5601 -7.7517 1.4158 24 1 0.2027 -7.6029 0.2577 25 1 1.8262 -6.5510 -1.0876 26 1 2.8253 -6.0792 0.3284 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000166479616.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:09 Heat of formation + Delta-G solvation = -0.783152 kcal Electronic energy + Delta-G solvation = -9227.503699 eV Core-core repulsion = 7498.507060 eV Total energy + Delta-G solvation = -1728.996639 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 167.101 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.72904 -36.26310 -33.29425 -30.24541 -29.49694 -26.11525 -23.73559 -21.44757 -19.44166 -19.16173 -16.90863 -16.69597 -16.09576 -15.11580 -14.83254 -14.50569 -13.17636 -12.94843 -12.74192 -12.66418 -12.65293 -12.24397 -12.07879 -12.02656 -11.79278 -11.48734 -10.93462 -9.73967 -9.01570 -7.96600 -5.26085 1.43018 1.45873 1.49924 1.56148 2.55385 3.36283 3.71405 3.82468 4.06455 4.25427 4.48228 4.61425 4.68674 4.77825 4.93302 5.02569 5.06435 5.22486 5.33612 5.46254 5.48633 5.71868 6.04620 6.25669 7.31311 8.07866 8.32317 9.27144 Molecular weight = 167.10amu Principal moments of inertia in cm(-1) A = 0.109732 B = 0.010368 C = 0.009886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 255.105082 B = 2700.053459 C = 2831.740713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.077 4.077 3 Si 0.979 3.021 4 H -0.276 1.276 5 H -0.293 1.293 6 H -0.277 1.277 7 C -0.252 4.252 8 H 0.075 0.925 9 N -0.746 5.746 10 C 0.160 3.840 11 C -0.076 4.076 12 H 0.069 0.931 13 C -0.172 4.172 14 C -0.168 4.168 15 C -0.092 4.092 16 C -0.113 4.113 17 H 0.252 0.748 18 H 0.373 0.627 19 H 0.021 0.979 20 H 0.015 0.985 21 H 0.096 0.904 22 H 0.138 0.862 23 H 0.088 0.912 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.599 -12.413 1.309 12.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.269 4.269 3 Si 0.807 3.193 4 H -0.202 1.202 5 H -0.219 1.219 6 H -0.203 1.203 7 C -0.384 4.384 8 H 0.093 0.907 9 N -0.388 5.388 10 C 0.034 3.966 11 C -0.094 4.094 12 H 0.087 0.913 13 C -0.190 4.190 14 C -0.186 4.186 15 C -0.129 4.129 16 C -0.151 4.151 17 H 0.061 0.939 18 H 0.205 0.795 19 H 0.039 0.961 20 H 0.033 0.967 21 H 0.115 0.885 22 H 0.155 0.845 23 H 0.107 0.893 24 H 0.105 0.895 25 H 0.106 0.894 26 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.769 -12.323 1.297 12.696 hybrid contribution -0.207 1.354 0.075 1.372 sum 2.562 -10.969 1.371 11.347 Atomic orbital electron populations 1.69829 1.06741 1.26267 1.59413 1.25631 0.96460 1.01291 1.03480 0.85141 0.77175 0.78738 0.78278 1.20197 1.21915 1.20311 1.19665 0.91557 0.85556 1.41610 0.90737 1.42599 1.05631 1.01242 1.89364 1.20827 0.93798 0.84815 0.97162 1.21219 0.96500 0.95565 0.96136 0.91328 1.23227 1.00583 0.97868 0.97326 1.23526 1.00612 0.94564 0.99920 1.21395 0.98279 0.97092 0.96137 1.22519 0.98869 0.92608 1.01062 0.93906 0.79482 0.96104 0.96688 0.88541 0.84468 0.89322 0.89529 0.89438 0.90757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.48 13.06 21.65 0.28 -61.19 15 2 C -0.08 -4.56 5.50 84.86 0.47 -4.09 15 3 Si 0.98 47.30 29.55 68.60 2.03 49.33 15 4 H -0.28 -12.78 7.11 99.48 0.71 -12.08 15 5 H -0.29 -14.15 7.11 99.48 0.71 -13.44 15 6 H -0.28 -12.87 7.11 99.48 0.71 -12.17 15 7 C -0.25 -14.82 9.99 84.03 0.84 -13.98 15 8 H 0.07 4.19 7.83 -2.91 -0.02 4.17 15 9 N -0.75 -40.51 5.45 -343.46 -1.87 -42.38 15 10 C 0.16 6.94 5.59 86.38 0.48 7.42 15 11 C -0.08 -2.65 2.95 -10.86 -0.03 -2.69 15 12 H 0.07 2.53 8.14 -2.39 -0.02 2.51 15 13 C -0.17 -6.00 9.81 26.27 0.26 -5.74 15 14 C -0.17 -4.57 10.78 26.26 0.28 -4.29 15 15 C -0.09 -2.03 6.81 30.59 0.21 -1.82 15 16 C -0.11 -2.90 6.72 31.76 0.21 -2.68 15 17 H 0.25 15.38 8.31 -92.71 -0.77 14.61 15 18 H 0.37 21.46 7.55 -92.71 -0.70 20.76 15 19 H 0.02 0.89 8.14 -2.38 -0.02 0.87 15 20 H 0.02 0.67 8.14 -2.39 -0.02 0.65 15 21 H 0.10 3.88 8.06 -2.91 -0.02 3.86 15 22 H 0.14 3.13 8.06 -2.91 -0.02 3.11 15 23 H 0.09 1.58 8.14 -2.39 -0.02 1.56 15 24 H 0.09 1.66 8.14 -2.39 -0.02 1.64 15 25 H 0.09 1.93 8.14 -2.39 -0.02 1.91 15 26 H 0.07 1.86 7.91 -2.39 -0.02 1.84 15 Total: -1.00 -65.90 224.10 3.60 -62.30 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: 0.45 Total: 19.81 kcal Atomic # 6 Polarization: -30.59 SS G_CDS: 2.72 Total: -27.87 kcal Atomic # 7 Polarization: -101.98 SS G_CDS: -1.59 Total: -103.57 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.33 kcal Total: -65.90 3.60 -62.30 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166479616.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.517 kcal (2) G-P(sol) polarization free energy of solvation -65.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds