Wall clock time and date at job start Mon Mar 30 2020 01:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86800 * 120.00105 * 2 1 4 4 H 1.48501 * 109.47483 * 270.00407 * 3 2 1 5 5 H 1.48498 * 109.47011 * 30.00271 * 3 2 1 6 6 H 1.48502 * 109.47495 * 149.99894 * 3 2 1 7 7 C 1.38811 * 120.00081 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00195 * 0.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 180.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.52996 * 109.47059 * 179.72430 * 10 9 7 12 12 C 1.54637 * 111.03439 * 287.02076 * 11 10 9 13 13 C 1.51111 * 104.72562 * 217.33108 * 12 11 10 14 14 C 1.30525 * 111.09875 * 16.44205 * 13 12 11 15 15 C 1.51096 * 111.11063 * 359.97438 * 14 13 12 16 16 H 0.97008 * 120.00329 * 359.97438 * 1 2 3 17 17 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 18 18 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 19 19 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 20 20 H 1.08998 * 110.91533 * 51.03116 * 11 10 9 21 21 H 1.08997 * 110.39253 * 336.14221 * 12 11 10 22 22 H 1.09004 * 110.38763 * 98.52450 * 12 11 10 23 23 H 1.07994 * 124.44662 * 196.45795 * 13 12 11 24 24 H 1.08000 * 124.44042 * 180.02562 * 14 13 12 25 25 H 1.08996 * 110.38987 * 224.75599 * 15 14 13 26 26 H 1.08998 * 110.39162 * 102.37527 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4708 -0.0067 11 6 5.6163 -2.1913 -0.0115 12 6 6.0795 -1.6702 -1.3918 13 6 7.4387 -2.2962 -1.6023 14 6 7.6271 -3.2962 -0.7848 15 6 6.4255 -3.5035 0.1075 16 1 -0.4851 0.8401 0.0004 17 1 3.8646 -0.3620 0.0004 18 1 3.8521 -3.0451 0.8825 19 1 3.8454 -3.0397 -0.8974 20 1 5.8848 -1.4931 0.7812 21 1 5.3885 -1.9922 -2.1708 22 1 6.1600 -0.5832 -1.3799 23 1 8.1595 -1.9602 -2.3329 24 1 8.5245 -3.8961 -0.7503 25 1 6.7411 -3.6632 1.1384 26 1 5.8325 -4.3478 -0.2441 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168152955.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:55 Heat of formation + Delta-G solvation = 1.976523 kcal Electronic energy + Delta-G solvation = -9277.171228 eV Core-core repulsion = 7548.294257 eV Total energy + Delta-G solvation = -1728.876971 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 167.101 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.77715 -36.44583 -33.62147 -30.74005 -29.01515 -26.47727 -23.76315 -21.26497 -19.67853 -19.44762 -17.01874 -16.58498 -16.30017 -15.11421 -14.77198 -14.23461 -13.76681 -13.56429 -12.95618 -12.92060 -12.29698 -12.22650 -11.97890 -11.95278 -11.72686 -11.69259 -10.99000 -9.73229 -9.31859 -8.05079 -5.38788 1.36136 1.39859 1.43330 1.47442 2.46768 3.26101 3.50460 3.78622 3.90293 4.12190 4.44411 4.48746 4.73220 4.83871 4.91147 4.94342 5.07922 5.13311 5.20994 5.45679 5.66005 5.73249 6.09957 6.19373 7.05580 7.81820 8.02170 9.16682 Molecular weight = 167.10amu Principal moments of inertia in cm(-1) A = 0.081538 B = 0.012136 C = 0.011088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 343.316525 B = 2306.594130 C = 2524.718477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.063 4.063 3 Si 0.957 3.043 4 H -0.276 1.276 5 H -0.292 1.292 6 H -0.253 1.253 7 C -0.240 4.240 8 H 0.055 0.945 9 N -0.758 5.758 10 C 0.164 3.836 11 C -0.101 4.101 12 C -0.101 4.101 13 C -0.174 4.174 14 C -0.164 4.164 15 C -0.092 4.092 16 H 0.259 0.741 17 H 0.366 0.634 18 H 0.024 0.976 19 H 0.023 0.977 20 H 0.076 0.924 21 H 0.065 0.935 22 H 0.063 0.937 23 H 0.140 0.860 24 H 0.148 0.852 25 H 0.082 0.918 26 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.782 -3.806 -1.357 17.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.255 4.255 3 Si 0.783 3.217 4 H -0.202 1.202 5 H -0.219 1.219 6 H -0.177 1.177 7 C -0.371 4.371 8 H 0.073 0.927 9 N -0.404 5.404 10 C 0.038 3.962 11 C -0.120 4.120 12 C -0.138 4.138 13 C -0.191 4.191 14 C -0.182 4.182 15 C -0.130 4.130 16 H 0.068 0.932 17 H 0.199 0.801 18 H 0.042 0.958 19 H 0.041 0.959 20 H 0.095 0.905 21 H 0.083 0.917 22 H 0.081 0.919 23 H 0.158 0.842 24 H 0.165 0.835 25 H 0.101 0.899 26 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 16.575 -3.922 -1.348 17.086 hybrid contribution -0.272 1.020 -0.043 1.057 sum 16.302 -2.901 -1.392 16.617 Atomic orbital electron populations 1.69886 1.07169 1.26824 1.59580 1.25534 0.96166 1.01369 1.02418 0.85381 0.78616 0.79383 0.78275 1.20175 1.21895 1.17738 1.19081 0.82815 0.93576 1.41650 0.92693 1.42723 1.02461 1.04245 1.90945 1.20805 0.90168 0.87291 0.97965 1.22200 0.93500 0.98506 0.97823 1.21446 0.95457 1.00275 0.96601 1.23417 0.96899 0.98294 1.00517 1.23457 0.98825 0.98522 0.97388 1.21362 0.94630 0.96556 1.00446 0.93210 0.80070 0.95764 0.95922 0.90539 0.91694 0.91861 0.84209 0.83462 0.89923 0.90397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.40 13.97 21.65 0.30 -64.10 15 2 C -0.06 -3.84 5.50 84.86 0.47 -3.37 15 3 Si 0.96 46.40 27.74 68.60 1.90 48.30 15 4 H -0.28 -12.96 7.11 99.48 0.71 -12.26 15 5 H -0.29 -14.21 7.11 99.48 0.71 -13.50 15 6 H -0.25 -11.12 6.52 99.48 0.65 -10.47 15 7 C -0.24 -14.27 10.47 84.03 0.88 -13.39 15 8 H 0.06 3.56 8.06 -2.91 -0.02 3.54 15 9 N -0.76 -37.06 5.35 -343.46 -1.84 -38.90 15 10 C 0.16 6.52 5.57 86.38 0.48 7.00 15 11 C -0.10 -3.14 3.16 -9.68 -0.03 -3.17 15 12 C -0.10 -2.94 6.33 30.54 0.19 -2.74 15 13 C -0.17 -3.98 10.78 26.27 0.28 -3.70 15 14 C -0.16 -3.46 10.77 26.26 0.28 -3.18 15 15 C -0.09 -2.24 6.38 30.53 0.19 -2.05 15 16 H 0.26 16.05 8.31 -92.70 -0.77 15.28 15 17 H 0.37 16.99 5.53 -92.71 -0.51 16.48 15 18 H 0.02 0.98 8.14 -2.38 -0.02 0.96 15 19 H 0.02 0.93 7.92 -2.39 -0.02 0.91 15 20 H 0.08 2.38 8.14 -2.39 -0.02 2.36 15 21 H 0.06 2.07 7.74 -2.39 -0.02 2.06 15 22 H 0.06 1.84 8.14 -2.38 -0.02 1.82 15 23 H 0.14 2.58 8.06 -2.91 -0.02 2.55 15 24 H 0.15 2.29 8.06 -2.91 -0.02 2.27 15 25 H 0.08 1.77 8.14 -2.39 -0.02 1.75 15 26 H 0.08 1.89 7.89 -2.39 -0.02 1.87 15 Total: -1.00 -67.36 220.89 3.69 -63.67 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: 0.57 Total: 15.63 kcal Atomic # 6 Polarization: -27.35 SS G_CDS: 2.75 Total: -24.60 kcal Atomic # 7 Polarization: -101.46 SS G_CDS: -1.54 Total: -103.00 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 1.90 Total: 48.30 kcal Total: -67.36 3.69 -63.67 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168152955.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.642 kcal (2) G-P(sol) polarization free energy of solvation -67.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds