Wall clock time and date at job start Mon Mar 30 2020 02:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.40442 * 126.95328 * 2 1 4 4 C 1.32079 * 107.13401 * 179.97438 * 3 2 1 5 5 N 1.39207 * 125.24700 * 180.02562 * 4 3 2 6 6 N 1.32648 * 109.49981 * 359.77096 * 4 3 2 7 7 C 1.33149 * 109.75620 * 0.38610 * 6 4 3 8 8 C 1.40221 * 126.24054 * 179.88654 * 7 6 4 9 9 H 1.08000 * 120.00036 * 185.80180 * 8 7 6 10 10 C 1.40245 * 119.99870 * 5.79286 * 8 7 6 11 11 N 1.30660 * 119.99950 * 183.95889 * 10 8 7 12 12 Si 1.86803 * 120.00091 * 3.96560 * 10 8 7 13 13 H 1.48498 * 109.47151 * 179.97438 * 12 10 8 14 14 H 1.48506 * 109.46814 * 299.99483 * 12 10 8 15 15 H 1.48497 * 109.47078 * 59.99240 * 12 10 8 16 16 H 1.08999 * 109.46421 * 270.01855 * 1 2 3 17 17 H 1.09000 * 109.46967 * 30.02203 * 1 2 3 18 18 H 1.08998 * 109.46973 * 150.01902 * 1 2 3 19 19 H 0.96993 * 120.00070 * 359.97091 * 5 4 3 20 20 H 0.96996 * 119.99324 * 179.97438 * 5 4 3 21 21 H 0.97002 * 119.99617 * 354.82622 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.3093 1.1223 0.0000 4 6 3.5519 0.6745 0.0006 5 7 4.6932 1.4716 0.0013 6 7 3.5445 -0.6520 0.0059 7 6 2.2889 -1.0951 0.0005 8 6 1.8836 -2.4374 0.0014 9 1 0.8372 -2.6856 -0.0979 10 6 2.8370 -3.4577 0.1311 11 7 2.4692 -4.7091 0.0544 12 14 4.6328 -3.0276 0.4137 13 1 5.4305 -4.2759 0.5164 14 1 5.1315 -2.2130 -0.7235 15 1 4.7637 -2.2519 1.6731 16 1 -0.3632 0.0003 1.0277 17 1 -0.3633 0.8898 -0.5142 18 1 -0.3633 -0.8901 -0.5135 19 1 4.6097 2.4380 0.0009 20 1 5.5717 1.0606 0.0020 21 1 1.5285 -4.9346 -0.0169 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000211692235.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:41 Heat of formation + Delta-G solvation = 69.172095 kcal Electronic energy + Delta-G solvation = -9465.942942 eV Core-core repulsion = 7571.013536 eV Total energy + Delta-G solvation = -1894.929406 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 168.071 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -39.92982 -34.27346 -33.44138 -31.39831 -29.63205 -26.48113 -24.48355 -20.24244 -19.75883 -17.89515 -16.06013 -15.38938 -14.46277 -14.16673 -13.47568 -13.34279 -12.47132 -12.42354 -11.82002 -10.93498 -10.68060 -9.84052 -9.76949 -9.66980 -9.04446 -8.24837 -7.82500 -7.36712 -7.15224 -4.92392 3.13700 3.61289 3.75807 3.78642 4.02669 4.43370 4.50702 4.73712 5.25581 5.69269 6.02965 6.15079 6.40053 7.04951 7.32808 7.48571 7.86846 8.07935 8.39775 8.53938 8.58149 8.81797 9.92417 10.04238 Molecular weight = 168.07amu Principal moments of inertia in cm(-1) A = 0.047397 B = 0.025023 C = 0.016582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.608646 B = 1118.712318 C = 1688.189658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.137 3.863 2 N -0.457 5.457 3 N -0.448 5.448 4 C 0.483 3.517 5 N -0.841 5.841 6 N -0.664 5.664 7 C 0.419 3.581 8 C -0.495 4.495 9 H 0.086 0.914 10 C 0.064 3.936 11 N -0.808 5.808 12 Si 1.133 2.867 13 H -0.322 1.322 14 H -0.268 1.268 15 H -0.286 1.286 16 H 0.047 0.953 17 H 0.064 0.936 18 H 0.071 0.929 19 H 0.400 0.600 20 H 0.403 0.597 21 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.514 5.009 0.168 5.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.007 4.007 2 N -0.252 5.252 3 N -0.290 5.290 4 C 0.112 3.888 5 N -0.396 5.396 6 N -0.411 5.411 7 C 0.174 3.826 8 C -0.537 4.537 9 H 0.104 0.896 10 C -0.159 4.159 11 N -0.432 5.432 12 Si 0.964 3.036 13 H -0.254 1.254 14 H -0.194 1.194 15 H -0.213 1.213 16 H 0.065 0.935 17 H 0.082 0.918 18 H 0.089 0.911 19 H 0.228 0.772 20 H 0.232 0.768 21 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.783 4.823 0.300 5.151 hybrid contribution -1.805 0.689 -0.175 1.940 sum -0.022 5.511 0.125 5.513 Atomic orbital electron populations 1.21151 0.76922 1.01888 1.00785 1.49403 1.04876 1.03044 1.67844 1.77904 0.98510 1.07597 1.44999 1.20153 0.87071 0.87805 0.93767 1.40694 1.03587 1.06735 1.88559 1.69577 1.19697 1.08029 1.43766 1.20787 0.83414 0.89792 0.88634 1.19646 0.97333 0.87567 1.49110 0.89638 1.27509 1.08863 0.91183 0.88376 1.70628 1.21196 1.19082 1.32282 0.82331 0.70323 0.71189 0.79746 1.25387 1.19371 1.21349 0.93451 0.91772 0.91078 0.77171 0.76843 0.90584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 2.68 11.33 59.85 0.68 3.36 14 2 N -0.46 -11.56 4.12 -67.25 -0.28 -11.84 14 3 N -0.45 -11.43 12.74 29.87 0.38 -11.05 14 4 C 0.48 12.03 9.37 -321.96 -3.02 9.01 14 5 N -0.84 -15.83 9.11 29.89 0.27 -15.55 14 6 N -0.66 -18.09 6.43 -13.18 -0.08 -18.18 14 7 C 0.42 11.52 7.25 -155.85 -1.13 10.39 14 8 C -0.49 -13.51 9.48 -38.08 -0.36 -13.88 14 9 H 0.09 2.26 7.38 -52.49 -0.39 1.87 14 10 C 0.06 1.73 5.52 -17.30 -0.10 1.63 14 11 N -0.81 -21.80 13.64 55.56 0.76 -21.05 14 12 Si 1.13 28.21 25.88 -169.99 -4.40 23.81 14 13 H -0.32 -7.78 7.11 56.52 0.40 -7.38 14 14 H -0.27 -6.74 6.76 56.52 0.38 -6.36 14 15 H -0.29 -7.27 7.11 56.52 0.40 -6.87 14 16 H 0.05 0.85 8.14 -51.93 -0.42 0.43 14 17 H 0.06 1.11 8.14 -51.93 -0.42 0.69 14 18 H 0.07 1.30 7.39 -51.93 -0.38 0.92 14 19 H 0.40 6.26 8.95 -40.82 -0.37 5.90 14 20 H 0.40 6.74 8.95 -40.82 -0.37 6.37 14 21 H 0.28 7.25 8.72 -40.82 -0.36 6.90 14 LS Contribution 193.55 15.07 2.92 2.92 Total: -1.00 -32.08 193.55 -5.88 -37.96 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -1.52 Total: 2.47 kcal Atomic # 6 Polarization: 14.44 SS G_CDS: -3.93 Total: 10.51 kcal Atomic # 7 Polarization: -78.71 SS G_CDS: 1.05 Total: -77.66 kcal Atomic # 14 Polarization: 28.21 SS G_CDS: -4.40 Total: 23.81 kcal Total LS contribution 2.92 Total: 2.92 kcal Total: -32.08 -5.88 -37.96 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211692235.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.129 kcal (2) G-P(sol) polarization free energy of solvation -32.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds