Wall clock time and date at job start Mon Mar 30 2020 02:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46502 * 109.47281 * 2 1 4 4 N 1.28995 * 126.60582 * 270.20422 * 3 2 1 5 5 N 1.28578 * 109.45387 * 180.27151 * 4 3 2 6 6 N 1.28799 * 110.11150 * 359.71147 * 5 4 3 7 7 C 1.33301 * 107.71662 * 0.02562 * 6 5 4 8 8 C 1.40548 * 127.03864 * 180.02562 * 7 6 5 9 9 H 1.08002 * 120.00161 * 180.02562 * 8 7 6 10 10 C 1.40261 * 119.99908 * 359.74339 * 8 7 6 11 11 N 1.30644 * 120.00231 * 0.28066 * 10 8 7 12 12 Si 1.86803 * 119.99815 * 180.27886 * 10 8 7 13 13 H 1.48496 * 109.47491 * 60.00021 * 12 10 8 14 14 H 1.48498 * 109.47322 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.46993 * 300.00127 * 12 10 8 16 16 H 1.09000 * 109.47110 * 299.99579 * 1 2 3 17 17 H 1.09002 * 109.46896 * 59.99577 * 1 2 3 18 18 H 1.09001 * 109.47256 * 179.97438 * 1 2 3 19 19 H 1.09000 * 109.47110 * 240.00420 * 2 1 3 20 20 H 1.08995 * 109.46989 * 120.00796 * 2 1 3 21 21 H 0.97005 * 120.00011 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2713 2.1077 -1.0355 5 7 2.6876 3.2636 -0.6564 6 7 2.7120 3.3255 0.6299 7 6 2.2913 2.1515 1.1006 8 6 2.1591 1.7783 2.4492 9 1 1.8052 0.7902 2.7039 10 6 2.4923 2.6871 3.4642 11 7 2.9203 3.8824 3.1562 12 14 2.3239 2.1884 5.2566 13 1 3.1917 1.0143 5.5274 14 1 2.7356 3.3197 6.1260 15 1 0.9099 1.8350 5.5413 16 1 -0.3633 0.5138 0.8900 17 1 -0.3633 0.5139 -0.8900 18 1 -0.3634 -1.0277 -0.0005 19 1 1.8934 -0.5138 -0.8900 20 1 1.8933 -0.5139 0.8899 21 1 3.1504 4.5111 3.8583 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000211692325.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:05 Heat of formation + Delta-G solvation = 92.590855 kcal Electronic energy + Delta-G solvation = -9475.962965 eV Core-core repulsion = 7582.049072 eV Total energy + Delta-G solvation = -1893.913893 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 168.071 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -41.55070 -34.57320 -33.88883 -30.45557 -29.81446 -26.26153 -23.56454 -21.52817 -20.26904 -17.49300 -16.02612 -15.05642 -14.77125 -13.96213 -13.48332 -12.41517 -12.02355 -11.82828 -11.45910 -11.36035 -10.89022 -10.74878 -10.26305 -10.01008 -9.70035 -8.99777 -8.76006 -8.23087 -6.76725 -4.83253 2.86632 3.00836 3.03638 3.29552 3.72595 3.93766 4.25153 5.12614 5.29665 5.57031 5.69803 5.96295 6.11275 6.49376 6.65889 6.90070 7.09299 7.78655 7.83129 8.09366 8.57705 8.63942 10.17201 10.85410 Molecular weight = 168.07amu Principal moments of inertia in cm(-1) A = 0.055695 B = 0.019175 C = 0.014857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.613043 B = 1459.899575 C = 1884.224482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.141 3.859 3 N -0.397 5.397 4 N -0.197 5.197 5 N -0.108 5.108 6 N -0.352 5.352 7 C 0.323 3.677 8 C -0.442 4.442 9 H 0.090 0.910 10 C 0.078 3.922 11 N -0.732 5.732 12 Si 0.924 3.076 13 H -0.263 1.263 14 H -0.275 1.275 15 H -0.263 1.263 16 H 0.064 0.936 17 H 0.058 0.942 18 H 0.067 0.933 19 H 0.081 0.919 20 H 0.089 0.911 21 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.300 -7.369 2.799 8.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.017 3.983 3 N -0.203 5.203 4 N -0.183 5.183 5 N -0.103 5.103 6 N -0.212 5.212 7 C 0.073 3.927 8 C -0.485 4.485 9 H 0.108 0.892 10 C -0.149 4.149 11 N -0.356 5.356 12 Si 0.747 3.253 13 H -0.188 1.188 14 H -0.200 1.200 15 H -0.188 1.188 16 H 0.084 0.916 17 H 0.077 0.923 18 H 0.086 0.914 19 H 0.099 0.901 20 H 0.107 0.893 21 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.882 -6.220 1.748 7.074 hybrid contribution -0.380 -1.036 1.501 1.863 sum -3.262 -7.255 3.250 8.593 Atomic orbital electron populations 1.22134 0.95328 1.01887 1.03136 1.21314 0.94603 0.79200 1.03210 1.48264 1.54043 1.13258 1.04692 1.78091 1.24739 1.01641 1.13848 1.77876 1.13236 1.10814 1.08403 1.76173 1.28204 1.17906 0.98900 1.22655 0.93588 0.85953 0.90537 1.18337 1.42937 1.01108 0.86071 0.89219 1.25876 0.93180 0.94189 1.01655 1.69907 1.25867 1.04208 1.35608 0.86124 0.79797 0.79198 0.80185 1.18791 1.19957 1.18790 0.91650 0.92321 0.91447 0.90090 0.89316 0.90537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.60 10.24 37.16 0.38 -2.22 14 2 C 0.14 2.55 6.94 -4.04 -0.03 2.52 14 3 N -0.40 -9.88 3.42 -60.33 -0.21 -10.09 14 4 N -0.20 -5.32 13.25 60.35 0.80 -4.52 14 5 N -0.11 -3.20 13.38 60.35 0.81 -2.40 14 6 N -0.35 -10.81 10.71 31.20 0.33 -10.47 14 7 C 0.32 9.03 7.63 -155.55 -1.19 7.84 14 8 C -0.44 -11.37 9.06 -37.95 -0.34 -11.72 14 9 H 0.09 2.04 7.29 -52.49 -0.38 1.65 14 10 C 0.08 1.94 5.50 -17.30 -0.10 1.84 14 11 N -0.73 -19.72 11.98 55.56 0.67 -19.05 14 12 Si 0.92 17.81 29.56 -169.99 -5.03 12.78 14 13 H -0.26 -4.94 7.11 56.52 0.40 -4.54 14 14 H -0.27 -5.21 7.11 56.52 0.40 -4.80 14 15 H -0.26 -4.94 7.11 56.52 0.40 -4.54 14 16 H 0.06 1.11 8.14 -51.93 -0.42 0.69 14 17 H 0.06 0.96 8.14 -51.93 -0.42 0.54 14 18 H 0.07 0.80 8.14 -51.93 -0.42 0.37 14 19 H 0.08 1.29 8.14 -51.93 -0.42 0.87 14 20 H 0.09 1.46 7.49 -51.93 -0.39 1.07 14 21 H 0.28 6.85 8.29 -40.82 -0.34 6.51 14 LS Contribution 198.64 15.07 2.99 2.99 Total: -1.00 -32.15 198.64 -2.50 -34.65 By element: Atomic # 1 Polarization: -0.57 SS G_CDS: -1.60 Total: -2.17 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: -1.27 Total: -1.74 kcal Atomic # 7 Polarization: -48.93 SS G_CDS: 2.40 Total: -46.52 kcal Atomic # 14 Polarization: 17.81 SS G_CDS: -5.03 Total: 12.78 kcal Total LS contribution 2.99 Total: 2.99 kcal Total: -32.15 -2.50 -34.65 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211692325.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.245 kcal (2) G-P(sol) polarization free energy of solvation -32.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds