Wall clock time and date at job start Mon Mar 30 2020 01:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30776 * 126.07246 * 2 1 4 4 C 1.35099 * 107.27676 * 179.97438 * 3 2 1 5 5 C 1.41390 * 126.15763 * 179.97438 * 4 3 2 6 6 H 1.08003 * 119.99957 * 354.36018 * 5 4 3 7 7 C 1.39871 * 120.00000 * 174.35143 * 5 4 3 8 8 N 1.30855 * 119.99874 * 6.04810 * 7 5 4 9 9 Si 1.86799 * 119.99923 * 186.04102 * 7 5 4 10 10 H 1.48503 * 109.46846 * 94.98937 * 9 7 5 11 11 H 1.48504 * 109.46829 * 214.98445 * 9 7 5 12 12 H 1.48492 * 109.47271 * 334.98658 * 9 7 5 13 13 N 1.32598 * 107.68233 * 359.76870 * 4 3 2 14 14 N 1.28856 * 108.54029 * 0.38682 * 13 4 3 15 15 C 1.46498 * 125.67889 * 179.87291 * 14 13 4 16 16 H 1.09002 * 109.46578 * 270.01970 * 1 2 3 17 17 H 1.08998 * 109.46737 * 30.01179 * 1 2 3 18 18 H 1.08992 * 109.47242 * 150.01938 * 1 2 3 19 19 H 0.97004 * 119.99875 * 179.97438 * 8 7 5 20 20 H 1.09000 * 109.46995 * 269.69073 * 15 14 13 21 21 H 1.08996 * 109.47220 * 29.69309 * 15 14 13 22 22 H 1.09000 * 109.47000 * 149.69528 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2771 1.0570 0.0000 4 6 3.5560 0.6217 0.0006 5 6 4.7136 1.4337 0.0003 6 1 4.6212 2.5057 -0.0924 7 6 5.9783 0.8485 0.1202 8 7 6.0996 -0.4544 0.1135 9 14 7.4941 1.9269 0.2896 10 1 7.8250 2.0931 1.7277 11 1 8.6371 1.2877 -0.4106 12 1 7.2253 3.2569 -0.3135 13 7 3.5303 -0.7040 0.0060 14 7 2.3009 -1.0899 0.0005 15 6 1.8421 -2.4812 0.0011 16 1 -0.3632 0.0004 1.0277 17 1 -0.3633 0.8899 -0.5140 18 1 -0.3633 -0.8901 -0.5135 19 1 6.9768 -0.8603 0.1963 20 1 1.7283 -2.8266 -1.0265 21 1 2.5734 -3.1047 0.5152 22 1 0.8830 -2.5473 0.5148 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213580810.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:22 Heat of formation + Delta-G solvation = 79.447876 kcal Electronic energy + Delta-G solvation = -9275.897553 eV Core-core repulsion = 7446.839649 eV Total energy + Delta-G solvation = -1829.057904 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 167.075 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -41.10008 -33.72299 -32.41142 -31.32314 -27.44099 -27.00868 -24.15992 -20.36566 -19.35427 -16.74370 -15.47522 -15.08501 -14.46820 -13.18132 -12.86099 -12.72280 -12.39367 -11.91846 -11.88978 -11.04286 -11.01610 -10.38716 -10.03361 -9.72735 -9.16983 -8.44654 -8.18169 -7.45596 -6.29264 -4.20226 3.19137 3.27235 3.33111 3.42911 4.00100 4.22593 4.48746 5.37205 5.42163 5.67378 5.71882 5.82110 5.97571 6.03503 6.25701 6.92273 7.29315 7.59455 8.27876 8.45857 8.67925 9.04195 9.25942 10.42552 10.72032 Molecular weight = 167.08amu Principal moments of inertia in cm(-1) A = 0.093355 B = 0.014945 C = 0.013016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 299.858175 B = 1873.138176 C = 2150.674294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.158 3.842 3 N -0.554 5.554 4 C 0.318 3.682 5 C -0.437 4.437 6 H 0.084 0.916 7 C 0.073 3.927 8 N -0.784 5.784 9 Si 0.914 3.086 10 H -0.274 1.274 11 H -0.281 1.281 12 H -0.264 1.264 13 N -0.350 5.350 14 N -0.345 5.345 15 C 0.108 3.892 16 H 0.067 0.933 17 H 0.078 0.922 18 H 0.062 0.938 19 H 0.268 0.732 20 H 0.061 0.939 21 H 0.081 0.919 22 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.999 -3.055 0.188 6.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.117 4.117 3 N -0.285 5.285 4 C 0.057 3.943 5 C -0.479 4.479 6 H 0.102 0.898 7 C -0.146 4.146 8 N -0.413 5.413 9 Si 0.739 3.261 10 H -0.200 1.200 11 H -0.206 1.206 12 H -0.188 1.188 13 N -0.186 5.186 14 N -0.141 5.141 15 C -0.036 4.036 16 H 0.086 0.914 17 H 0.097 0.903 18 H 0.081 0.919 19 H 0.079 0.921 20 H 0.080 0.920 21 H 0.099 0.901 22 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.446 -3.346 0.195 6.395 hybrid contribution 0.531 0.173 0.101 0.568 sum -4.915 -3.173 0.295 5.857 Atomic orbital electron populations 1.19955 0.86796 1.02590 1.02100 1.24355 0.95744 0.84744 1.06857 1.71303 1.02892 1.27564 1.26725 1.20910 0.89933 0.86996 0.96429 1.18211 0.87100 0.93569 1.49052 0.89765 1.25714 1.00051 0.95114 0.93697 1.69984 1.24303 1.10074 1.36945 0.86222 0.80514 0.80662 0.78679 1.19959 1.20649 1.18816 1.75446 0.95731 1.14730 1.32648 1.47021 1.05259 1.06160 1.55620 1.21524 0.99763 0.80283 1.02031 0.91394 0.90314 0.91932 0.92122 0.92032 0.90058 0.90958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.89 9.95 36.01 0.36 -0.53 14 2 C 0.16 3.75 7.96 -155.37 -1.24 2.51 14 3 N -0.55 -15.71 11.44 -9.95 -0.11 -15.83 14 4 C 0.32 9.83 7.64 -157.66 -1.20 8.63 14 5 C -0.44 -13.33 9.49 -37.77 -0.36 -13.69 14 6 H 0.08 2.47 7.85 -52.48 -0.41 2.06 14 7 C 0.07 2.07 5.49 -17.36 -0.10 1.98 14 8 N -0.78 -23.10 11.97 55.54 0.66 -22.43 14 9 Si 0.91 20.84 29.56 -169.99 -5.03 15.81 14 10 H -0.27 -6.13 7.11 56.52 0.40 -5.73 14 11 H -0.28 -6.21 7.11 56.52 0.40 -5.81 14 12 H -0.26 -5.89 7.11 56.52 0.40 -5.49 14 13 N -0.35 -10.38 10.35 30.88 0.32 -10.07 14 14 N -0.34 -8.39 3.72 -65.01 -0.24 -8.63 14 15 C 0.11 1.83 10.98 59.85 0.66 2.49 14 16 H 0.07 0.97 8.14 -51.93 -0.42 0.55 14 17 H 0.08 1.21 8.14 -51.93 -0.42 0.79 14 18 H 0.06 0.81 7.68 -51.93 -0.40 0.41 14 19 H 0.27 7.20 8.30 -40.82 -0.34 6.86 14 20 H 0.06 0.93 8.14 -51.93 -0.42 0.51 14 21 H 0.08 1.37 8.14 -51.93 -0.42 0.95 14 22 H 0.07 0.94 7.61 -51.93 -0.40 0.54 14 LS Contribution 203.88 15.07 3.07 3.07 Total: -1.00 -35.81 203.88 -5.23 -41.04 By element: Atomic # 1 Polarization: -2.33 SS G_CDS: -2.03 Total: -4.36 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -1.88 Total: 1.39 kcal Atomic # 7 Polarization: -57.59 SS G_CDS: 0.63 Total: -56.96 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.03 Total: 15.81 kcal Total LS contribution 3.07 Total: 3.07 kcal Total: -35.81 -5.23 -41.04 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213580810.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.490 kcal (2) G-P(sol) polarization free energy of solvation -35.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds