Wall clock time and date at job start Mon Mar 30 2020 01:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.32223 * 125.15926 * 2 1 4 4 C 1.33069 * 109.80327 * 179.78325 * 3 2 1 5 5 C 1.40369 * 126.32290 * 180.25193 * 4 3 2 6 6 H 1.08004 * 120.00413 * 180.18196 * 5 4 3 7 7 C 1.40265 * 119.99593 * 0.17641 * 5 4 3 8 8 N 1.30643 * 120.00523 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00008 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47236 * 60.00080 * 9 7 5 11 11 H 1.48499 * 109.47521 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47172 * 300.00327 * 9 7 5 13 13 N 1.37027 * 107.36314 * 0.40523 * 4 3 2 14 14 C 1.46506 * 127.01694 * 179.87794 * 13 4 3 15 15 N 1.31406 * 125.15681 * 180.02562 * 2 1 3 16 16 H 1.08997 * 109.46619 * 269.98249 * 1 2 3 17 17 H 1.09001 * 109.46720 * 29.98476 * 1 2 3 18 18 H 1.09001 * 109.46703 * 149.98157 * 1 2 3 19 19 H 0.96999 * 120.00542 * 179.97438 * 8 7 5 20 20 H 1.08999 * 109.46871 * 269.70408 * 14 13 4 21 21 H 1.08994 * 109.46947 * 29.70115 * 14 13 4 22 22 H 1.08997 * 109.47271 * 149.70632 * 14 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2684 1.0810 0.0000 4 6 3.5516 0.7286 0.0047 5 6 4.6528 1.5990 0.0112 6 1 5.6565 1.2001 0.0117 7 6 4.4497 2.9869 0.0170 8 7 3.2357 3.4695 0.0168 9 14 5.9152 4.1453 0.0249 10 1 6.7399 3.9085 -1.1871 11 1 5.4354 5.5506 0.0308 12 1 6.7354 3.8977 1.2378 13 7 3.5996 -0.6408 -0.0014 14 6 4.7996 -1.4813 -0.0018 15 7 2.2637 -1.0744 -0.0005 16 1 -0.3632 -0.0003 1.0277 17 1 -0.3633 0.8901 -0.5136 18 1 -0.3633 -0.8898 -0.5141 19 1 3.0952 4.4292 0.0211 20 1 5.0970 -1.6894 -1.0296 21 1 5.6078 -0.9610 0.5120 22 1 4.5867 -2.4189 0.5117 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213580887.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:24 Heat of formation + Delta-G solvation = 71.491191 kcal Electronic energy + Delta-G solvation = -9278.055246 eV Core-core repulsion = 7448.652314 eV Total energy + Delta-G solvation = -1829.402932 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 167.075 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -39.62151 -33.64563 -32.66368 -29.81121 -28.25711 -26.36127 -24.17358 -20.09937 -18.74915 -16.78861 -15.39360 -14.42346 -14.25042 -13.28034 -12.66736 -12.56191 -11.85071 -11.63347 -11.46041 -11.45087 -11.07517 -10.70449 -10.31314 -9.72774 -9.38425 -7.80069 -7.75204 -7.70220 -6.56715 -4.65313 2.97809 3.08769 3.10497 3.49576 3.89754 4.20954 4.57291 5.45777 5.73086 5.93327 6.13728 6.18567 6.24240 6.47202 6.62920 6.98833 7.24970 7.58455 8.01919 8.36513 8.50266 8.77646 9.14136 10.26627 10.39822 Molecular weight = 167.08amu Principal moments of inertia in cm(-1) A = 0.059425 B = 0.018055 C = 0.013989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.072975 B = 1550.451502 C = 2001.076674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 C 0.204 3.796 3 N -0.561 5.561 4 C 0.406 3.594 5 C -0.452 4.452 6 H 0.085 0.915 7 C 0.082 3.918 8 N -0.728 5.728 9 Si 0.917 3.083 10 H -0.265 1.265 11 H -0.277 1.277 12 H -0.265 1.265 13 N -0.463 5.463 14 C 0.131 3.869 15 N -0.418 5.418 16 H 0.062 0.938 17 H 0.070 0.930 18 H 0.059 0.941 19 H 0.277 0.723 20 H 0.045 0.955 21 H 0.071 0.929 22 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.326 -1.089 0.101 2.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.079 4.079 3 N -0.296 5.296 4 C 0.158 3.842 5 C -0.493 4.493 6 H 0.103 0.897 7 C -0.144 4.144 8 N -0.352 5.352 9 Si 0.741 3.259 10 H -0.190 1.190 11 H -0.201 1.201 12 H -0.190 1.190 13 N -0.257 5.257 14 C -0.013 4.013 15 N -0.253 5.253 16 H 0.081 0.919 17 H 0.089 0.911 18 H 0.078 0.922 19 H 0.088 0.912 20 H 0.064 0.936 21 H 0.090 0.910 22 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.812 -1.380 0.094 2.280 hybrid contribution 1.056 0.508 0.004 1.171 sum 2.867 -0.872 0.098 2.999 Atomic orbital electron populations 1.19771 0.87243 1.01717 1.01532 1.23849 0.96955 0.88521 0.98561 1.71304 0.99326 1.25878 1.33068 1.21015 0.92956 0.80082 0.90158 1.18345 0.91264 0.89918 1.49806 0.89712 1.25837 0.96869 0.98669 0.93075 1.69984 1.21352 1.14137 1.29688 0.86245 0.81184 0.78700 0.79765 1.18961 1.20145 1.18973 1.50157 1.03689 1.05538 1.66350 1.21165 0.85221 0.94369 1.00577 1.77633 0.87424 1.22573 1.37689 0.91886 0.91074 0.92165 0.91201 0.93638 0.91046 0.92040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.89 10.51 36.01 0.38 -0.51 14 2 C 0.20 5.52 8.08 -157.16 -1.27 4.25 14 3 N -0.56 -16.78 9.40 -10.11 -0.10 -16.87 14 4 C 0.41 11.80 7.51 -155.87 -1.17 10.63 14 5 C -0.45 -12.28 9.04 -38.02 -0.34 -12.62 14 6 H 0.08 2.08 7.23 -52.48 -0.38 1.70 14 7 C 0.08 2.12 5.50 -17.30 -0.10 2.03 14 8 N -0.73 -19.95 11.93 55.56 0.66 -19.28 14 9 Si 0.92 18.56 29.56 -169.99 -5.03 13.53 14 10 H -0.26 -5.25 7.11 56.52 0.40 -4.85 14 11 H -0.28 -5.45 7.11 56.52 0.40 -5.05 14 12 H -0.27 -5.24 7.11 56.52 0.40 -4.84 14 13 N -0.46 -12.33 4.12 -67.24 -0.28 -12.60 14 14 C 0.13 2.66 11.33 59.85 0.68 3.34 14 15 N -0.42 -11.42 12.71 32.36 0.41 -11.01 14 16 H 0.06 1.18 8.14 -51.93 -0.42 0.76 14 17 H 0.07 1.40 8.14 -51.93 -0.42 0.98 14 18 H 0.06 1.10 8.14 -51.93 -0.42 0.68 14 19 H 0.28 6.83 8.29 -40.82 -0.34 6.49 14 20 H 0.05 0.84 8.14 -51.93 -0.42 0.42 14 21 H 0.07 1.32 7.44 -51.93 -0.39 0.93 14 22 H 0.06 1.12 8.14 -51.93 -0.42 0.69 14 LS Contribution 204.69 15.07 3.08 3.08 Total: -1.00 -33.06 204.69 -5.08 -38.14 By element: Atomic # 1 Polarization: -0.07 SS G_CDS: -2.01 Total: -2.08 kcal Atomic # 6 Polarization: 8.93 SS G_CDS: -1.82 Total: 7.10 kcal Atomic # 7 Polarization: -60.47 SS G_CDS: 0.70 Total: -59.77 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.03 Total: 13.53 kcal Total LS contribution 3.08 Total: 3.08 kcal Total: -33.06 -5.08 -38.14 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213580887.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.628 kcal (2) G-P(sol) polarization free energy of solvation -33.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds