Wall clock time and date at job start Mon Mar 30 2020 01:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50705 * 109.47085 * 2 1 4 4 N 1.31064 * 126.71676 * 270.15291 * 3 2 1 5 5 N 1.40054 * 107.41077 * 180.26431 * 4 3 2 6 6 H 0.97002 * 125.44836 * 179.76364 * 5 4 3 7 7 N 1.28693 * 109.10725 * 359.73839 * 5 4 3 8 8 C 1.32817 * 109.29489 * 359.97438 * 7 5 4 9 9 C 1.41641 * 126.18547 * 179.97438 * 8 7 5 10 10 H 1.08005 * 119.99766 * 179.74975 * 9 8 7 11 11 C 1.39825 * 120.00336 * 0.02708 * 9 8 7 12 12 N 1.30897 * 119.99598 * 359.72019 * 11 9 8 13 13 Si 1.86798 * 119.99916 * 179.72587 * 11 9 8 14 14 H 1.48493 * 109.47326 * 90.00177 * 13 11 9 15 15 H 1.48506 * 109.46545 * 209.99927 * 13 11 9 16 16 H 1.48498 * 109.47210 * 329.99638 * 13 11 9 17 17 H 1.09003 * 109.47154 * 180.02562 * 1 2 3 18 18 H 1.09009 * 109.47222 * 300.00037 * 1 2 3 19 19 H 1.08996 * 109.47363 * 59.99876 * 1 2 3 20 20 H 1.08996 * 109.47072 * 240.00235 * 2 1 3 21 21 H 1.09000 * 109.47429 * 119.99610 * 2 1 3 22 22 H 0.97000 * 120.00073 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2908 2.1606 -1.0506 5 7 2.7384 3.4043 -0.5876 6 1 3.0054 4.1501 -1.1474 7 7 2.7382 3.3996 0.6993 8 6 2.3137 2.2185 1.1339 9 6 2.1746 1.8262 2.4877 10 1 1.8145 0.8370 2.7290 11 6 2.4981 2.7216 3.5119 12 7 2.9346 3.9205 3.2194 13 14 2.3074 2.2067 5.2973 14 1 3.5726 1.5920 5.7731 15 1 1.9943 3.3990 6.1255 16 1 1.2036 1.2201 5.4129 17 1 -0.3633 -1.0277 0.0005 18 1 -0.3634 0.5139 0.8900 19 1 -0.3634 0.5138 -0.8899 20 1 1.8933 -0.5138 -0.8900 21 1 1.8933 -0.5138 0.8900 22 1 3.1587 4.5417 3.9298 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213581279.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:48 Heat of formation + Delta-G solvation = 54.750739 kcal Electronic energy + Delta-G solvation = -9277.570780 eV Core-core repulsion = 7447.441928 eV Total energy + Delta-G solvation = -1830.128852 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 167.075 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -42.09310 -35.48025 -35.00021 -31.60760 -31.08629 -27.55633 -24.89148 -22.72804 -20.54994 -18.74196 -18.34466 -16.42628 -15.81867 -15.01273 -14.86741 -14.76239 -13.45183 -13.19485 -12.85895 -12.57718 -12.42139 -12.04458 -11.88990 -11.24113 -11.18541 -10.65971 -10.40466 -9.60216 -8.32543 -6.27536 1.30593 1.46234 1.48688 1.62718 2.27781 2.34252 2.49404 3.51204 4.03059 4.27879 4.65041 4.69034 4.82611 5.14219 5.23833 5.41766 5.48668 5.65738 5.92054 6.36717 6.74866 6.95558 7.18363 8.20073 8.68343 Molecular weight = 167.08amu Principal moments of inertia in cm(-1) A = 0.052285 B = 0.019039 C = 0.014520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.401132 B = 1470.334640 C = 1927.950927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.021 4.021 3 C -0.012 4.012 4 N -0.329 5.329 5 N -0.380 5.380 6 H 0.453 0.547 7 N -0.326 5.326 8 C 0.116 3.884 9 C -0.467 4.467 10 H 0.099 0.901 11 C 0.018 3.982 12 N -0.825 5.825 13 Si 0.988 3.012 14 H -0.267 1.267 15 H -0.280 1.280 16 H -0.250 1.250 17 H 0.090 0.910 18 H 0.043 0.957 19 H 0.042 0.958 20 H 0.081 0.919 21 H 0.086 0.914 22 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.858 -5.831 -0.452 6.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.061 4.061 3 C -0.186 4.186 4 N -0.164 5.164 5 N -0.209 5.209 6 H 0.303 0.697 7 N -0.169 5.169 8 C -0.039 4.039 9 C -0.507 4.507 10 H 0.117 0.883 11 C -0.196 4.196 12 N -0.455 5.455 13 Si 0.809 3.191 14 H -0.192 1.192 15 H -0.205 1.205 16 H -0.173 1.173 17 H 0.108 0.892 18 H 0.062 0.938 19 H 0.062 0.938 20 H 0.100 0.900 21 H 0.104 0.896 22 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.424 -4.610 -1.271 5.361 hybrid contribution 0.111 0.223 0.784 0.822 sum -2.313 -4.387 -0.487 4.983 Atomic orbital electron populations 1.21627 0.93692 1.02756 1.01048 1.19801 0.96585 0.86505 1.03213 1.23929 1.04734 0.99453 0.90457 1.76895 1.19522 0.94716 1.25255 1.48557 1.56964 1.12075 1.03284 0.69739 1.74616 1.26592 1.23162 0.92566 1.20685 0.99114 0.88120 0.96028 1.19026 1.42785 1.01271 0.87662 0.88293 1.26770 0.92972 0.94192 1.05643 1.70099 1.33656 1.06383 1.35395 0.85109 0.79685 0.78470 0.75803 1.19169 1.20506 1.17286 0.89165 0.93801 0.93839 0.90029 0.89590 0.91711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.19 9.89 71.98 0.71 -3.48 14 2 C -0.02 -0.78 6.31 29.85 0.19 -0.59 14 3 C -0.01 -0.57 6.62 43.47 0.29 -0.29 14 4 N -0.33 -16.04 12.76 -46.27 -0.59 -16.63 14 5 N -0.38 -18.95 8.29 37.02 0.31 -18.64 14 6 H 0.45 18.73 8.96 -340.52 -3.05 15.68 14 7 N -0.33 -18.84 10.51 -51.94 -0.55 -19.39 14 8 C 0.12 6.56 6.76 40.63 0.27 6.84 14 9 C -0.47 -25.46 9.17 23.49 0.22 -25.24 14 10 H 0.10 4.87 7.40 -2.91 -0.02 4.84 14 11 C 0.02 0.98 5.49 85.22 0.47 1.45 14 12 N -0.83 -47.32 11.95 21.81 0.26 -47.06 14 13 Si 0.99 39.69 29.56 68.60 2.03 41.71 14 14 H -0.27 -10.35 7.11 99.48 0.71 -9.64 14 15 H -0.28 -11.04 7.11 99.48 0.71 -10.34 14 16 H -0.25 -9.33 7.11 99.48 0.71 -8.62 14 17 H 0.09 2.13 8.14 -2.39 -0.02 2.11 14 18 H 0.04 1.52 8.14 -2.38 -0.02 1.50 14 19 H 0.04 1.39 8.14 -2.39 -0.02 1.37 14 20 H 0.08 2.61 8.14 -2.39 -0.02 2.59 14 21 H 0.09 2.98 7.66 -2.39 -0.02 2.97 14 22 H 0.27 14.40 8.30 -92.71 -0.77 13.63 14 Total: -1.00 -67.00 203.53 1.79 -65.22 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: -1.82 Total: 16.09 kcal Atomic # 6 Polarization: -23.46 SS G_CDS: 2.15 Total: -21.31 kcal Atomic # 7 Polarization: -101.15 SS G_CDS: -0.57 Total: -101.71 kcal Atomic # 14 Polarization: 39.69 SS G_CDS: 2.03 Total: 41.71 kcal Total: -67.00 1.79 -65.22 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213581279.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.967 kcal (2) G-P(sol) polarization free energy of solvation -67.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds