Wall clock time and date at job start Mon Mar 30 2020 01:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.47033 * 2 1 4 4 C 1.35019 * 126.48837 * 125.00324 * 3 2 1 5 5 C 1.39017 * 106.45345 * 180.24057 * 4 3 2 6 6 C 1.41490 * 126.02114 * 179.73462 * 5 4 3 7 7 H 1.07999 * 120.00288 * 354.33772 * 6 5 4 8 8 C 1.39738 * 120.00168 * 174.33189 * 6 5 4 9 9 N 1.30981 * 119.99920 * 6.04502 * 8 6 5 10 10 Si 1.86798 * 120.00081 * 186.04158 * 8 6 5 11 11 H 1.48504 * 109.46956 * 94.98486 * 10 8 6 12 12 H 1.48501 * 109.47124 * 214.98192 * 10 8 6 13 13 H 1.48496 * 109.47222 * 334.98212 * 10 8 6 14 14 N 1.34848 * 107.95712 * 359.57025 * 5 4 3 15 15 N 1.28668 * 109.63502 * 0.44505 * 14 5 4 16 16 H 1.08998 * 109.47240 * 59.99648 * 1 2 3 17 17 H 1.09005 * 109.47327 * 179.97438 * 1 2 3 18 18 H 1.08994 * 109.47064 * 299.99532 * 1 2 3 19 19 H 1.09007 * 109.46988 * 240.00148 * 2 1 3 20 20 H 1.08998 * 109.47240 * 120.00352 * 2 1 3 21 21 H 1.08001 * 126.77434 * 359.97438 * 4 3 2 22 22 H 0.97000 * 120.00131 * 179.97438 * 9 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8730 1.9306 0.8892 5 6 3.0464 3.2546 0.5023 6 6 3.8593 4.2121 1.1536 7 1 4.3433 3.9645 2.0868 8 6 4.0361 5.4783 0.5894 9 7 3.3577 5.8203 -0.4776 10 14 5.2397 6.6831 1.3570 11 1 6.5502 6.5816 0.6658 12 1 4.7130 8.0647 1.2189 13 1 5.4127 6.3608 2.7962 14 7 2.3063 3.4644 -0.6052 15 7 1.6872 2.3822 -0.9230 16 1 -0.3633 0.5139 -0.8899 17 1 -0.3634 -1.0277 -0.0005 18 1 -0.3633 0.5137 0.8900 19 1 1.8933 -0.5138 -0.8901 20 1 1.8933 -0.5139 0.8899 21 1 3.3284 1.4398 1.7366 22 1 3.4801 6.6993 -0.8690 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213581442.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:29 Heat of formation + Delta-G solvation = 83.363564 kcal Electronic energy + Delta-G solvation = -9128.127409 eV Core-core repulsion = 7299.239302 eV Total energy + Delta-G solvation = -1828.888107 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 167.075 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.78500 -34.32320 -32.95505 -29.69450 -28.97333 -24.91105 -23.37050 -20.18731 -19.89116 -17.08511 -15.28581 -14.81308 -14.59022 -13.50890 -12.96649 -12.86655 -12.07894 -11.82613 -11.31464 -11.06768 -10.92619 -10.73848 -10.21073 -9.66301 -9.23093 -8.85706 -8.47795 -7.43294 -6.31247 -4.12415 2.93004 3.20725 3.24416 3.27819 3.72175 4.18671 4.38159 5.14799 5.40242 5.55336 5.59799 5.82030 6.07785 6.23891 6.41287 6.97956 7.18913 7.35635 7.56470 8.21317 8.48272 8.88500 9.14519 10.26837 10.66179 Molecular weight = 167.08amu Principal moments of inertia in cm(-1) A = 0.127466 B = 0.012603 C = 0.011773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 219.614030 B = 2221.207356 C = 2377.706455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.135 3.865 3 N -0.382 5.382 4 C -0.147 4.147 5 C 0.144 3.856 6 C -0.457 4.457 7 H 0.080 0.920 8 C 0.073 3.927 9 N -0.779 5.779 10 Si 0.908 3.092 11 H -0.274 1.274 12 H -0.280 1.280 13 H -0.265 1.265 14 N -0.230 5.230 15 N -0.134 5.134 16 H 0.068 0.932 17 H 0.064 0.936 18 H 0.057 0.943 19 H 0.071 0.929 20 H 0.081 0.919 21 H 0.156 0.844 22 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.962 -6.930 2.833 7.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.012 3.988 3 N -0.179 5.179 4 C -0.297 4.297 5 C 0.014 3.986 6 C -0.493 4.493 7 H 0.098 0.902 8 C -0.146 4.146 9 N -0.405 5.405 10 Si 0.733 3.267 11 H -0.199 1.199 12 H -0.206 1.206 13 H -0.190 1.190 14 N -0.102 5.102 15 N -0.111 5.111 16 H 0.087 0.913 17 H 0.083 0.917 18 H 0.076 0.924 19 H 0.089 0.911 20 H 0.099 0.901 21 H 0.173 0.827 22 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.835 -6.435 1.403 6.837 hybrid contribution 1.172 0.123 1.349 1.791 sum -0.663 -6.312 2.752 6.918 Atomic orbital electron populations 1.22035 0.94837 1.01649 1.03441 1.21328 0.95151 0.80076 1.02264 1.49670 1.35428 1.10009 1.22789 1.22963 1.07757 0.96647 1.02323 1.19269 0.96735 0.90612 0.91941 1.18518 1.27316 0.95871 1.07636 0.90183 1.25779 0.95617 0.98598 0.94572 1.70028 1.33496 1.19691 1.17309 0.86326 0.80723 0.79559 0.80078 1.19927 1.20555 1.18952 1.75083 1.07955 1.13670 1.13518 1.81431 1.23562 0.92120 1.13970 0.91322 0.91709 0.92369 0.91053 0.90068 0.82676 0.91836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 10.11 37.16 0.38 -1.92 14 2 C 0.14 2.17 7.25 -4.04 -0.03 2.15 14 3 N -0.38 -8.74 3.69 -60.35 -0.22 -8.97 14 4 C -0.15 -3.58 11.61 -15.86 -0.18 -3.77 14 5 C 0.14 4.17 6.72 -85.01 -0.57 3.60 14 6 C -0.46 -12.96 9.37 -37.78 -0.35 -13.32 14 7 H 0.08 2.10 7.85 -52.49 -0.41 1.69 14 8 C 0.07 2.01 5.49 -17.35 -0.10 1.91 14 9 N -0.78 -22.76 11.95 55.54 0.66 -22.09 14 10 Si 0.91 20.08 29.56 -169.99 -5.03 15.05 14 11 H -0.27 -5.97 7.11 56.52 0.40 -5.57 14 12 H -0.28 -6.09 7.11 56.52 0.40 -5.69 14 13 H -0.27 -5.68 7.11 56.52 0.40 -5.28 14 14 N -0.23 -6.94 10.58 32.05 0.34 -6.60 14 15 N -0.13 -3.61 13.60 60.35 0.82 -2.79 14 16 H 0.07 1.08 8.14 -51.93 -0.42 0.66 14 17 H 0.06 0.68 8.14 -51.93 -0.42 0.26 14 18 H 0.06 0.87 8.14 -51.93 -0.42 0.45 14 19 H 0.07 1.04 8.14 -51.93 -0.42 0.62 14 20 H 0.08 1.08 8.08 -51.93 -0.42 0.66 14 21 H 0.16 3.21 8.06 -52.49 -0.42 2.79 14 22 H 0.27 7.24 8.30 -40.82 -0.34 6.90 14 LS Contribution 206.11 15.07 3.11 3.11 Total: -1.00 -32.90 206.11 -3.26 -36.16 By element: Atomic # 1 Polarization: -0.43 SS G_CDS: -2.08 Total: -2.51 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: -0.86 Total: -11.35 kcal Atomic # 7 Polarization: -42.05 SS G_CDS: 1.60 Total: -40.45 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.03 Total: 15.05 kcal Total LS contribution 3.11 Total: 3.11 kcal Total: -32.90 -3.26 -36.16 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213581442.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.521 kcal (2) G-P(sol) polarization free energy of solvation -32.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds