Wall clock time and date at job start Mon Mar 30 2020 02:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.50887 * 111.18566 * 2 1 4 4 C 1.54379 * 103.48162 * 158.11446 * 3 2 1 5 5 H 1.09002 * 117.60642 * 197.14420 * 4 3 2 6 6 C 1.53003 * 118.12574 * 41.62148 * 4 3 2 7 7 C 1.53000 * 60.54746 * 266.77969 * 6 4 3 8 8 C 1.50696 * 119.52401 * 248.26847 * 7 6 4 9 9 H 1.07996 * 120.00728 * 70.69018 * 8 7 6 10 10 C 1.37879 * 119.99492 * 250.69469 * 8 7 6 11 11 N 1.31518 * 120.00123 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 119.99873 * 180.02562 * 10 8 7 13 13 H 1.48492 * 109.47294 * 89.99714 * 12 10 8 14 14 H 1.48507 * 109.46783 * 209.99942 * 12 10 8 15 15 H 1.48501 * 109.47134 * 329.99185 * 12 10 8 16 16 C 1.48565 * 110.99970 * 116.57565 * 2 1 3 17 17 H 1.09004 * 109.46987 * 303.42361 * 1 2 3 18 18 H 1.08999 * 109.47300 * 63.41997 * 1 2 3 19 19 H 1.09001 * 109.47179 * 183.42643 * 1 2 3 20 20 H 1.08998 * 110.83308 * 39.76016 * 3 2 1 21 21 H 1.09003 * 111.06039 * 276.57796 * 3 2 1 22 22 H 1.08997 * 117.44121 * 14.43019 * 6 4 3 23 23 H 1.09006 * 117.44066 * 159.12990 * 6 4 3 24 24 H 0.97003 * 120.00037 * 180.02562 * 11 10 8 25 25 H 1.08999 * 110.40874 * 82.18114 * 16 2 1 26 26 H 1.08995 * 110.40895 * 319.74120 * 16 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0143 1.4069 0.0000 4 6 3.4432 1.2390 0.5596 5 1 3.9500 2.1315 0.9267 6 6 4.2713 0.0464 0.0770 7 6 3.4432 -0.0814 1.3572 8 6 4.1438 -0.2064 2.6855 9 1 4.6643 0.6425 3.1035 10 6 4.1203 -1.4046 3.3672 11 7 3.4861 -2.4383 2.8584 12 14 4.9881 -1.5594 5.0142 13 1 4.0457 -1.2048 6.1055 14 1 5.4553 -2.9570 5.1980 15 1 6.1535 -0.6396 5.0480 16 6 2.0014 -0.6205 1.2404 17 1 -0.3633 0.5661 0.8577 18 1 -0.3634 0.4598 -0.9190 19 1 -0.3633 -1.0258 0.0614 20 1 1.4242 2.0513 0.6515 21 1 2.0472 1.8142 -1.0105 22 1 3.9176 -0.4865 -0.8055 23 1 5.3543 0.1108 0.1836 24 1 3.4692 -3.2812 3.3382 25 1 2.0078 -1.7067 1.1496 26 1 1.4098 -0.3138 2.1030 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213581522.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:57 Heat of formation + Delta-G solvation = 36.437283 kcal Electronic energy + Delta-G solvation = -9687.370026 eV Core-core repulsion = 7959.987386 eV Total energy + Delta-G solvation = -1727.382640 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 167.101 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.55675 -33.50731 -32.08820 -27.45534 -26.16495 -25.08093 -21.83706 -19.05025 -18.77470 -16.38840 -14.75978 -14.50321 -14.10989 -13.33259 -12.50679 -12.20710 -12.02344 -11.78141 -11.22140 -10.97558 -10.85444 -10.45890 -10.32291 -10.09813 -9.44738 -8.84729 -8.47082 -7.96805 -7.57531 -6.07710 -4.09979 3.27210 3.34164 3.37590 4.36179 4.86950 4.98174 5.37750 5.74290 5.79917 5.95073 6.09697 6.27788 6.32748 6.52959 6.58939 6.62590 6.88570 7.03149 7.27396 7.37393 7.55177 7.73778 7.86229 7.93647 8.45146 8.88668 9.51075 11.00738 Molecular weight = 167.10amu Principal moments of inertia in cm(-1) A = 0.069576 B = 0.016169 C = 0.014514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 402.342882 B = 1731.331444 C = 1928.730585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.533 5.533 3 C 0.069 3.931 4 C -0.231 4.231 5 H 0.091 0.909 6 C -0.158 4.158 7 C 0.056 3.944 8 C -0.489 4.489 9 H 0.062 0.938 10 C 0.070 3.930 11 N -0.882 5.882 12 Si 0.897 3.103 13 H -0.280 1.280 14 H -0.285 1.285 15 H -0.273 1.273 16 C 0.085 3.915 17 H 0.019 0.981 18 H 0.056 0.944 19 H 0.062 0.938 20 H 0.037 0.963 21 H 0.064 0.936 22 H 0.073 0.927 23 H 0.078 0.922 24 H 0.262 0.738 25 H 0.097 0.903 26 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.012 3.492 -2.455 5.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.257 5.257 3 C -0.058 4.058 4 C -0.249 4.249 5 H 0.109 0.891 6 C -0.196 4.196 7 C 0.055 3.945 8 C -0.527 4.527 9 H 0.080 0.920 10 C -0.134 4.134 11 N -0.518 5.518 12 Si 0.725 3.275 13 H -0.206 1.206 14 H -0.210 1.210 15 H -0.198 1.198 16 C -0.042 4.042 17 H 0.037 0.963 18 H 0.075 0.925 19 H 0.081 0.919 20 H 0.055 0.945 21 H 0.082 0.918 22 H 0.092 0.908 23 H 0.096 0.904 24 H 0.072 0.928 25 H 0.115 0.885 26 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -2.926 2.988 -2.876 5.076 hybrid contribution 0.109 0.410 1.577 1.633 sum -2.817 3.398 -1.300 4.602 Atomic orbital electron populations 1.22375 0.89888 1.01202 0.99491 1.65813 1.06451 1.14382 1.39084 1.22804 0.94269 0.89917 0.98815 1.23217 0.96324 0.94347 1.11041 0.89057 1.22773 0.96432 0.99901 1.00493 1.19878 0.92320 0.91050 0.91213 1.20390 1.33188 0.97020 1.02131 0.92029 1.25000 0.95010 0.95593 0.97756 1.69955 1.41794 1.01826 1.38246 0.86509 0.79930 0.77425 0.83661 1.20594 1.21027 1.19781 1.22536 0.94003 1.00610 0.87021 0.96269 0.92527 0.91878 0.94498 0.91792 0.90804 0.90398 0.92805 0.88454 0.95003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.56 60.06 0.57 0.92 15 2 N -0.53 -11.42 5.22 -236.13 -1.23 -12.65 15 3 C 0.07 1.40 6.62 -0.85 -0.01 1.40 15 4 C -0.23 -5.23 6.99 -89.23 -0.62 -5.86 15 5 H 0.09 1.99 8.14 -51.93 -0.42 1.57 15 6 C -0.16 -3.78 9.66 -26.73 -0.26 -4.04 15 7 C 0.06 1.47 2.51 -154.28 -0.39 1.08 15 8 C -0.49 -13.70 9.32 -34.44 -0.32 -14.02 15 9 H 0.06 1.70 7.81 -52.49 -0.41 1.29 15 10 C 0.07 1.92 5.40 -17.82 -0.10 1.83 15 11 N -0.88 -25.02 11.53 55.43 0.64 -24.38 15 12 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 15 13 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 15 H -0.27 -6.34 7.11 56.52 0.40 -5.94 15 16 C 0.08 2.11 5.28 -2.18 -0.01 2.10 15 17 H 0.02 0.33 8.04 -51.93 -0.42 -0.09 15 18 H 0.06 0.86 8.14 -51.93 -0.42 0.44 15 19 H 0.06 1.06 8.14 -51.93 -0.42 0.64 15 20 H 0.04 0.71 7.99 -51.93 -0.41 0.30 15 21 H 0.06 1.17 8.14 -51.93 -0.42 0.74 15 22 H 0.07 1.74 8.00 -51.93 -0.42 1.33 15 23 H 0.08 1.82 8.14 -51.93 -0.42 1.39 15 24 H 0.26 7.05 8.31 -40.82 -0.34 6.71 15 25 H 0.10 2.62 7.09 -51.93 -0.37 2.25 15 26 H 0.03 0.81 7.97 -51.93 -0.41 0.40 15 LS Contribution 218.87 15.07 3.30 3.30 Total: -1.00 -28.42 218.87 -7.13 -35.56 By element: Atomic # 1 Polarization: 2.40 SS G_CDS: -3.69 Total: -1.29 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: -1.13 Total: -16.59 kcal Atomic # 7 Polarization: -36.43 SS G_CDS: -0.59 Total: -37.03 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 3.30 Total: 3.30 kcal Total: -28.42 -7.13 -35.56 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213581522.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.995 kcal (2) G-P(sol) polarization free energy of solvation -28.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds