Wall clock time and date at job start Mon Mar 30 2020 02:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.50887 * 111.18566 * 2 1 4 4 C 1.54379 * 103.48162 * 158.11446 * 3 2 1 5 5 H 1.09002 * 117.60642 * 197.14420 * 4 3 2 6 6 C 1.53003 * 118.12574 * 41.62148 * 4 3 2 7 7 C 1.53000 * 60.54746 * 266.77969 * 6 4 3 8 8 C 1.50696 * 119.52401 * 248.26847 * 7 6 4 9 9 H 1.07996 * 120.00728 * 70.69018 * 8 7 6 10 10 C 1.37879 * 119.99492 * 250.69469 * 8 7 6 11 11 N 1.31518 * 120.00123 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 119.99873 * 180.02562 * 10 8 7 13 13 H 1.48492 * 109.47294 * 89.99714 * 12 10 8 14 14 H 1.48507 * 109.46783 * 209.99942 * 12 10 8 15 15 H 1.48501 * 109.47134 * 329.99185 * 12 10 8 16 16 C 1.48565 * 110.99970 * 116.57565 * 2 1 3 17 17 H 1.09004 * 109.46987 * 303.42361 * 1 2 3 18 18 H 1.08999 * 109.47300 * 63.41997 * 1 2 3 19 19 H 1.09001 * 109.47179 * 183.42643 * 1 2 3 20 20 H 1.08998 * 110.83308 * 39.76016 * 3 2 1 21 21 H 1.09003 * 111.06039 * 276.57796 * 3 2 1 22 22 H 1.08997 * 117.44121 * 14.43019 * 6 4 3 23 23 H 1.09006 * 117.44066 * 159.12990 * 6 4 3 24 24 H 0.97003 * 120.00037 * 180.02562 * 11 10 8 25 25 H 1.08999 * 110.40874 * 82.18114 * 16 2 1 26 26 H 1.08995 * 110.40895 * 319.74120 * 16 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0143 1.4069 0.0000 4 6 3.4432 1.2390 0.5596 5 1 3.9500 2.1315 0.9267 6 6 4.2713 0.0464 0.0770 7 6 3.4432 -0.0814 1.3572 8 6 4.1438 -0.2064 2.6855 9 1 4.6643 0.6425 3.1035 10 6 4.1203 -1.4046 3.3672 11 7 3.4861 -2.4383 2.8584 12 14 4.9881 -1.5594 5.0142 13 1 4.0457 -1.2048 6.1055 14 1 5.4553 -2.9570 5.1980 15 1 6.1535 -0.6396 5.0480 16 6 2.0014 -0.6205 1.2404 17 1 -0.3633 0.5661 0.8577 18 1 -0.3634 0.4598 -0.9190 19 1 -0.3633 -1.0258 0.0614 20 1 1.4242 2.0513 0.6515 21 1 2.0472 1.8142 -1.0105 22 1 3.9176 -0.4865 -0.8055 23 1 5.3543 0.1108 0.1836 24 1 3.4692 -3.2812 3.3382 25 1 2.0078 -1.7067 1.1496 26 1 1.4098 -0.3138 2.1030 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213581522.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:56 Heat of formation + Delta-G solvation = 18.078975 kcal Electronic energy + Delta-G solvation = -9688.166102 eV Core-core repulsion = 7959.987386 eV Total energy + Delta-G solvation = -1728.178716 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 167.101 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.35814 -35.31230 -34.07418 -29.28711 -27.80124 -27.10046 -23.57279 -20.89535 -20.65917 -18.37241 -16.74034 -16.23744 -15.84811 -14.96562 -14.38133 -13.90661 -13.74887 -13.53571 -12.99297 -12.84458 -12.80138 -12.25366 -12.07191 -11.86709 -11.40173 -10.85053 -10.42952 -9.84856 -9.29875 -8.14758 -6.24566 1.41910 1.42587 1.53481 2.40214 2.99225 3.21873 3.43025 4.00999 4.23579 4.43365 4.50179 4.62237 4.66148 4.86132 4.89587 4.96340 5.07503 5.12985 5.42537 5.49876 5.54815 5.80558 5.92380 6.24676 6.40615 6.80139 7.39362 8.92920 Molecular weight = 167.10amu Principal moments of inertia in cm(-1) A = 0.069576 B = 0.016169 C = 0.014514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 402.342882 B = 1731.331444 C = 1928.730585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.542 5.542 3 C 0.073 3.927 4 C -0.210 4.210 5 H 0.100 0.900 6 C -0.156 4.156 7 C 0.008 3.992 8 C -0.513 4.513 9 H 0.055 0.945 10 C 0.022 3.978 11 N -0.909 5.909 12 Si 0.963 3.037 13 H -0.274 1.274 14 H -0.280 1.280 15 H -0.268 1.268 16 C 0.101 3.899 17 H 0.023 0.977 18 H 0.087 0.913 19 H 0.064 0.936 20 H 0.050 0.950 21 H 0.093 0.907 22 H 0.074 0.926 23 H 0.077 0.923 24 H 0.263 0.737 25 H 0.067 0.933 26 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.297 4.455 -2.722 6.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.266 5.266 3 C -0.054 4.054 4 C -0.229 4.229 5 H 0.118 0.882 6 C -0.193 4.193 7 C 0.008 3.992 8 C -0.551 4.551 9 H 0.073 0.927 10 C -0.178 4.178 11 N -0.546 5.546 12 Si 0.787 3.213 13 H -0.200 1.200 14 H -0.206 1.206 15 H -0.193 1.193 16 C -0.026 4.026 17 H 0.041 0.959 18 H 0.106 0.894 19 H 0.083 0.917 20 H 0.068 0.932 21 H 0.111 0.889 22 H 0.093 0.907 23 H 0.095 0.905 24 H 0.072 0.928 25 H 0.086 0.914 26 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -3.219 3.966 -3.155 6.004 hybrid contribution 0.176 0.142 1.607 1.623 sum -3.043 4.108 -1.548 5.342 Atomic orbital electron populations 1.22478 0.87389 1.01914 1.01233 1.65754 1.08917 1.15169 1.36804 1.22904 0.92420 0.89437 1.00643 1.23360 0.97498 0.93343 1.08668 0.88171 1.22706 0.96407 1.00874 0.99359 1.20044 0.93252 0.94574 0.91379 1.20686 1.33755 0.97152 1.03520 0.92677 1.25779 0.95670 0.95190 1.01197 1.70083 1.42758 1.02183 1.39605 0.85490 0.78898 0.77473 0.79389 1.19960 1.20552 1.19282 1.22144 0.93664 0.98983 0.87845 0.95855 0.89418 0.91698 0.93196 0.88852 0.90737 0.90487 0.92752 0.91431 0.96943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.60 9.56 127.69 1.22 1.82 15 2 N -0.54 -22.28 5.22 -900.97 -4.71 -26.98 15 3 C 0.07 2.73 6.62 85.98 0.57 3.30 15 4 C -0.21 -9.18 6.99 -9.90 -0.07 -9.25 15 5 H 0.10 4.16 8.14 -2.39 -0.02 4.14 15 6 C -0.16 -7.35 9.66 30.60 0.30 -7.06 15 7 C 0.01 0.44 2.51 -52.03 -0.13 0.31 15 8 C -0.51 -28.98 9.32 25.60 0.24 -28.74 15 9 H 0.06 3.07 7.81 -2.91 -0.02 3.05 15 10 C 0.02 1.23 5.40 84.65 0.46 1.68 15 11 N -0.91 -52.44 11.53 21.45 0.25 -52.19 15 12 Si 0.96 43.41 29.54 68.60 2.03 45.43 15 13 H -0.27 -12.01 7.11 99.48 0.71 -11.30 15 14 H -0.28 -12.33 7.11 99.48 0.71 -11.62 15 15 H -0.27 -11.77 7.11 99.48 0.71 -11.07 15 16 C 0.10 5.06 5.28 86.45 0.46 5.52 15 17 H 0.02 0.74 8.04 -2.38 -0.02 0.72 15 18 H 0.09 2.33 8.14 -2.39 -0.02 2.31 15 19 H 0.06 2.08 8.14 -2.39 -0.02 2.06 15 20 H 0.05 1.76 7.99 -2.39 -0.02 1.74 15 21 H 0.09 3.00 8.14 -2.39 -0.02 2.98 15 22 H 0.07 3.46 8.00 -2.39 -0.02 3.44 15 23 H 0.08 3.57 8.14 -2.38 -0.02 3.55 15 24 H 0.26 14.36 8.31 -92.71 -0.77 13.59 15 25 H 0.07 3.74 7.09 -2.39 -0.02 3.72 15 26 H 0.01 0.64 7.97 -2.39 -0.02 0.63 15 Total: -1.00 -59.97 218.87 1.74 -58.23 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: 1.14 Total: 7.93 kcal Atomic # 6 Polarization: -35.46 SS G_CDS: 3.04 Total: -32.42 kcal Atomic # 7 Polarization: -74.72 SS G_CDS: -4.46 Total: -79.17 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Total: -59.97 1.74 -58.23 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213581522.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.306 kcal (2) G-P(sol) polarization free energy of solvation -59.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds