Wall clock time and date at job start Mon Mar 30 2020 02:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48495 * 109.47216 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 299.99948 * 3 2 1 6 6 H 1.48501 * 109.47057 * 59.99929 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47106 * 180.02562 * 9 7 2 11 11 C 1.35883 * 126.07757 * 125.00001 * 10 9 7 12 12 C 1.35581 * 107.58019 * 179.97438 * 11 10 9 13 13 O 1.36231 * 126.05340 * 179.97438 * 12 11 10 14 14 C 1.40116 * 107.89657 * 0.02562 * 12 11 10 15 15 N 1.30866 * 108.35744 * 359.71276 * 14 12 11 16 16 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 17 17 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 18 18 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 19 19 H 1.07996 * 126.20856 * 359.97438 * 11 10 9 20 20 H 0.96698 * 113.99932 * 90.00193 * 13 12 11 21 21 H 1.08004 * 125.82128 * 179.97438 * 14 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2030 -3.6126 -0.0015 11 6 2.2435 -4.6306 0.8977 12 6 3.2665 -5.4477 0.5455 13 8 3.6429 -6.5858 1.1927 14 6 3.8688 -4.9136 -0.6014 15 7 3.2297 -3.8204 -0.9315 16 1 -0.4849 0.8401 0.0004 17 1 0.6240 -2.5575 0.8880 18 1 0.6246 -2.5563 -0.8919 19 1 1.5811 -4.7645 1.7401 20 1 3.2016 -7.3845 0.8726 21 1 4.7135 -5.3349 -1.1262 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213582693.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:18 Heat of formation + Delta-G solvation = 28.113145 kcal Electronic energy + Delta-G solvation = -9087.980182 eV Core-core repulsion = 7158.977575 eV Total energy + Delta-G solvation = -1929.002607 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 168.064 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -40.38728 -36.46140 -33.56445 -31.40347 -28.80019 -26.64285 -23.30722 -20.55000 -20.20049 -17.56226 -16.55426 -15.68737 -14.56963 -14.24645 -13.70037 -13.40519 -12.97975 -12.20523 -11.64111 -11.03135 -10.89640 -10.88198 -10.27729 -9.85784 -9.52179 -8.73043 -8.56673 -7.62033 -6.28151 -4.33394 2.60331 3.21315 3.22075 3.28926 3.35021 3.49032 4.29702 4.88215 5.08274 5.47564 5.67404 6.09389 6.42090 6.79152 6.96093 7.15526 7.65004 7.81652 7.86081 8.19985 8.48349 8.75528 9.32767 10.80835 Molecular weight = 168.06amu Principal moments of inertia in cm(-1) A = 0.096727 B = 0.011645 C = 0.011063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 289.404416 B = 2403.888399 C = 2530.452997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.062 3.938 3 Si 0.909 3.091 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.531 4.531 8 H 0.070 0.930 9 C 0.257 3.743 10 N -0.322 5.322 11 C 0.027 3.973 12 C -0.082 4.082 13 O -0.476 6.476 14 C 0.000 4.000 15 N -0.269 5.269 16 H 0.267 0.733 17 H 0.056 0.944 18 H 0.048 0.952 19 H 0.170 0.830 20 H 0.366 0.634 21 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.433 -7.571 0.921 8.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.141 4.141 3 Si 0.736 3.264 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.569 4.569 8 H 0.088 0.912 9 C 0.140 3.860 10 N -0.105 5.105 11 C -0.123 4.123 12 C -0.139 4.139 13 O -0.279 6.279 14 C -0.185 4.185 15 N -0.094 5.094 16 H 0.077 0.923 17 H 0.074 0.926 18 H 0.066 0.934 19 H 0.187 0.813 20 H 0.217 0.783 21 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 2.460 -5.965 0.428 6.467 hybrid contribution 0.081 -0.153 0.390 0.427 sum 2.541 -6.119 0.818 6.676 Atomic orbital electron populations 1.69930 1.06066 1.27619 1.49697 1.24951 0.95013 0.99632 0.94467 0.86245 0.80100 0.82274 0.77752 1.19480 1.20612 1.20725 1.21299 0.94094 0.89309 1.52205 0.91170 1.19791 0.85647 0.81166 0.99410 1.49454 1.23892 1.19392 1.17805 1.22671 1.00314 0.91738 0.97577 1.18165 1.01825 0.94071 0.99790 1.84967 1.67383 1.14907 1.60674 1.24019 1.01635 0.95683 0.97183 1.77419 1.00746 1.16964 1.14247 0.92316 0.92612 0.93406 0.81295 0.78314 0.80881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.27 13.29 55.43 0.74 -24.53 14 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 14 3 Si 0.91 21.41 29.54 -169.99 -5.02 16.39 14 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 14 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 14 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 14 7 C -0.53 -14.85 9.24 -34.44 -0.32 -15.17 14 8 H 0.07 2.04 7.81 -52.49 -0.41 1.63 14 9 C 0.26 6.53 6.27 -5.19 -0.03 6.50 14 10 N -0.32 -7.47 3.69 -62.23 -0.23 -7.70 14 11 C 0.03 0.53 11.51 -16.71 -0.19 0.34 14 12 C -0.08 -1.52 7.25 -39.83 -0.29 -1.81 14 13 O -0.48 -7.49 13.68 -20.48 -0.28 -7.77 14 14 C 0.00 0.00 12.03 -17.26 -0.21 -0.21 14 15 N -0.27 -6.22 12.41 30.68 0.38 -5.84 14 16 H 0.27 7.09 8.31 -40.82 -0.34 6.75 14 17 H 0.06 1.39 8.07 -51.93 -0.42 0.97 14 18 H 0.05 1.27 8.14 -51.93 -0.42 0.85 14 19 H 0.17 2.77 8.06 -52.49 -0.42 2.34 14 20 H 0.37 3.82 9.07 45.56 0.41 4.24 14 21 H 0.17 2.69 8.06 -52.48 -0.42 2.27 14 LS Contribution 203.21 15.07 3.06 3.06 Total: -1.00 -30.95 203.21 -3.31 -34.26 By element: Atomic # 1 Polarization: 1.68 SS G_CDS: -0.82 Total: 0.86 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: -1.14 Total: -8.73 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: 0.89 Total: -38.07 kcal Atomic # 8 Polarization: -7.49 SS G_CDS: -0.28 Total: -7.77 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 3.06 Total: 3.06 kcal Total: -30.95 -3.31 -34.26 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213582693.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.371 kcal (2) G-P(sol) polarization free energy of solvation -30.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds