Wall clock time and date at job start Mon Mar 30 2020 01:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30933 * 125.79584 * 2 1 4 4 N 1.40075 * 108.40133 * 180.02562 * 3 2 1 5 5 C 1.37307 * 126.07960 * 179.97438 * 4 3 2 6 6 H 1.08000 * 120.00418 * 179.74688 * 5 4 3 7 7 C 1.38985 * 120.00199 * 0.02671 * 5 4 3 8 8 N 1.31305 * 119.99597 * 359.71882 * 7 5 4 9 9 Si 1.86798 * 119.99977 * 179.72557 * 7 5 4 10 10 H 1.48490 * 109.47339 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47239 * 119.99923 * 9 7 5 12 12 H 1.48504 * 109.46636 * 239.99482 * 9 7 5 13 13 C 1.36603 * 107.84305 * 0.25872 * 4 3 2 14 14 C 1.35645 * 107.49974 * 359.57885 * 13 4 3 15 15 N 1.40568 * 126.07168 * 180.13708 * 14 13 4 16 16 H 1.09002 * 109.47330 * 89.98110 * 1 2 3 17 17 H 1.09006 * 109.46796 * 209.97821 * 1 2 3 18 18 H 1.08998 * 109.47318 * 329.97363 * 1 2 3 19 19 H 0.97001 * 119.99541 * 179.97438 * 8 7 5 20 20 H 1.07994 * 126.24902 * 179.71124 * 13 4 3 21 21 H 0.97000 * 119.99781 * 180.33622 * 15 14 13 22 22 H 0.96998 * 120.00262 * 0.33367 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2728 1.0620 0.0000 4 7 3.6095 0.6432 -0.0006 5 6 4.7128 1.4605 -0.0013 6 1 5.7035 1.0304 0.0024 7 6 4.5549 2.8413 -0.0009 8 7 3.3505 3.3643 -0.0054 9 14 6.0560 3.9531 0.0060 10 1 7.2870 3.1226 0.0109 11 1 6.0421 4.8111 -1.2059 12 1 6.0322 4.8094 1.2190 13 6 3.6202 -0.7227 -0.0068 14 6 2.3297 -1.1408 -0.0005 15 7 1.8925 -2.4767 -0.0010 16 1 -0.3634 0.0003 -1.0277 17 1 -0.3633 -0.8902 0.5135 18 1 -0.3634 0.8897 0.5142 19 1 3.2403 4.3280 -0.0047 20 1 4.4960 -1.3544 -0.0132 21 1 0.9433 -2.6763 -0.0011 22 1 2.5400 -3.1990 -0.0014 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219578431.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:27 Heat of formation + Delta-G solvation = 51.395437 kcal Electronic energy + Delta-G solvation = -9235.877530 eV Core-core repulsion = 7405.603180 eV Total energy + Delta-G solvation = -1830.274349 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 167.075 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -41.24755 -35.90962 -34.21201 -32.89918 -29.56382 -28.51698 -25.71122 -21.75520 -20.64487 -19.40750 -17.15121 -16.55601 -16.32497 -15.45763 -15.22587 -14.50516 -13.63112 -13.55234 -13.38110 -12.83225 -12.58218 -12.49866 -12.02828 -11.67186 -10.77016 -10.61230 -9.74855 -8.39326 -7.94775 -6.05149 1.34170 1.40393 1.58585 1.84649 2.16827 2.50082 2.88826 3.14444 3.70475 4.41379 4.54259 4.83552 4.95677 5.07240 5.17224 5.20939 5.52237 6.02601 6.27608 6.76471 7.19431 7.51464 7.64214 7.87685 8.61303 Molecular weight = 167.08amu Principal moments of inertia in cm(-1) A = 0.089471 B = 0.015030 C = 0.012958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 312.874167 B = 1862.509526 C = 2160.234083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 C -0.097 4.097 3 N -0.296 5.296 4 N -0.181 5.181 5 C -0.356 4.356 6 H 0.128 0.872 7 C -0.008 4.008 8 N -0.831 5.831 9 Si 1.016 2.984 10 H -0.247 1.247 11 H -0.271 1.271 12 H -0.272 1.272 13 C -0.136 4.136 14 C 0.031 3.969 15 N -0.867 5.867 16 H 0.062 0.938 17 H 0.082 0.918 18 H 0.050 0.950 19 H 0.273 0.727 20 H 0.164 0.836 21 H 0.397 0.603 22 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.333 -5.106 0.028 5.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.254 4.254 3 N -0.131 5.131 4 N 0.046 4.954 5 C -0.487 4.487 6 H 0.146 0.854 7 C -0.218 4.218 8 N -0.460 5.460 9 Si 0.836 3.164 10 H -0.170 1.170 11 H -0.196 1.196 12 H -0.197 1.197 13 C -0.284 4.284 14 C -0.079 4.079 15 N -0.418 5.418 16 H 0.081 0.919 17 H 0.101 0.899 18 H 0.069 0.931 19 H 0.083 0.917 20 H 0.181 0.819 21 H 0.225 0.775 22 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 0.302 -3.539 0.032 3.552 hybrid contribution 0.442 -0.664 -0.006 0.798 sum 0.745 -4.202 0.027 4.268 Atomic orbital electron populations 1.19767 0.86379 1.01961 1.01529 1.22594 0.97857 0.90440 1.14552 1.77900 0.86768 1.21529 1.26907 1.44545 1.04460 1.03272 1.43158 1.20463 0.85174 0.88803 1.54298 0.85405 1.26753 1.01576 0.98846 0.94611 1.70399 1.23948 1.12756 1.38889 0.84578 0.76409 0.77193 0.78250 1.16978 1.19649 1.19670 1.21830 0.98024 0.85533 1.23030 1.17374 0.90879 0.86875 1.12799 1.41033 1.08735 1.00782 1.91238 0.91878 0.89890 0.93104 0.91695 0.81916 0.77482 0.77639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.47 10.30 71.23 0.73 -0.74 14 2 C -0.10 -4.97 7.24 43.28 0.31 -4.66 14 3 N -0.30 -17.86 10.40 -46.85 -0.49 -18.35 14 4 N -0.18 -10.64 3.74 -189.97 -0.71 -11.35 14 5 C -0.36 -20.17 10.25 84.02 0.86 -19.31 14 6 H 0.13 6.49 7.83 -2.91 -0.02 6.47 14 7 C -0.01 -0.42 5.50 84.95 0.47 0.05 14 8 N -0.83 -49.26 11.81 21.66 0.26 -49.00 14 9 Si 1.02 40.63 29.55 68.60 2.03 42.66 14 10 H -0.25 -9.02 7.11 99.48 0.71 -8.32 14 11 H -0.27 -10.55 7.11 99.48 0.71 -9.85 14 12 H -0.27 -10.57 7.11 99.48 0.71 -9.86 14 13 C -0.14 -6.87 11.50 83.35 0.96 -5.91 14 14 C 0.03 1.43 7.22 37.73 0.27 1.70 14 15 N -0.87 -29.33 9.18 -51.65 -0.47 -29.80 14 16 H 0.06 2.26 8.14 -2.39 -0.02 2.24 14 17 H 0.08 2.62 7.69 -2.38 -0.02 2.60 14 18 H 0.05 2.01 8.14 -2.39 -0.02 1.99 14 19 H 0.27 14.82 8.31 -92.71 -0.77 14.05 14 20 H 0.16 7.09 8.06 -2.91 -0.02 7.07 14 21 H 0.40 11.35 8.35 -92.71 -0.77 10.58 14 22 H 0.40 11.28 8.96 -92.71 -0.83 10.45 14 Total: -1.00 -71.14 203.48 3.86 -67.29 By element: Atomic # 1 Polarization: 27.79 SS G_CDS: -0.36 Total: 27.43 kcal Atomic # 6 Polarization: -32.48 SS G_CDS: 3.61 Total: -28.87 kcal Atomic # 7 Polarization: -107.09 SS G_CDS: -1.42 Total: -108.50 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 2.03 Total: 42.66 kcal Total: -71.14 3.86 -67.29 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219578431.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.681 kcal (2) G-P(sol) polarization free energy of solvation -71.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds