Wall clock time and date at job start Mon Mar 30 2020 02:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36188 * 116.99609 * 2 1 4 4 C 1.40506 * 126.05143 * 0.04158 * 3 2 1 5 5 N 1.30946 * 108.40744 * 179.70386 * 4 3 2 6 6 N 1.40080 * 108.35784 * 0.40586 * 5 4 3 7 7 C 1.37335 * 126.09436 * 179.85067 * 6 5 4 8 8 H 1.07998 * 120.00245 * 173.76436 * 7 6 5 9 9 C 1.38990 * 120.00217 * 354.04209 * 7 6 5 10 10 N 1.31294 * 119.99607 * 5.57731 * 9 7 6 11 11 Si 1.86799 * 120.00144 * 185.57848 * 9 7 6 12 12 H 1.48500 * 109.47142 * 94.97977 * 11 9 7 13 13 H 1.48491 * 109.47150 * 214.97902 * 11 9 7 14 14 H 1.48503 * 109.47244 * 334.98001 * 11 9 7 15 15 C 1.35499 * 126.05182 * 179.97438 * 3 2 1 16 16 H 1.09002 * 109.46631 * 180.02562 * 1 2 3 17 17 H 1.09001 * 109.47649 * 299.99836 * 1 2 3 18 18 H 1.08999 * 109.47436 * 60.00209 * 1 2 3 19 19 H 1.08004 * 125.79382 * 359.96672 * 4 3 2 20 20 H 0.97002 * 119.99476 * 179.97438 * 10 9 7 21 21 H 1.07999 * 126.23452 * 0.07316 * 15 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0472 1.2135 0.0000 4 6 1.4104 2.4659 0.0008 5 7 2.3304 3.3976 0.0070 6 7 3.5864 2.7774 0.0009 7 6 4.8032 3.4142 0.0015 8 1 5.7130 2.8403 0.0980 9 6 4.8636 4.7978 -0.1162 10 7 3.7576 5.5053 -0.1178 11 14 6.5182 5.6506 -0.2722 12 1 6.8291 5.8692 -1.7077 13 1 6.4688 6.9589 0.4284 14 1 7.5723 4.8015 0.3388 15 6 3.3853 1.4268 0.0005 16 1 -0.3633 -1.0277 0.0005 17 1 -0.3634 0.5138 0.8900 18 1 -0.3634 0.5138 -0.8900 19 1 0.3431 2.6319 0.0011 20 1 3.7998 6.4710 -0.1996 21 1 4.1528 0.6670 -0.0002 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221139843.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:04 Heat of formation + Delta-G solvation = 20.862830 kcal Electronic energy + Delta-G solvation = -9277.062455 eV Core-core repulsion = 7347.745450 eV Total energy + Delta-G solvation = -1929.317004 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 168.064 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -41.52568 -38.58942 -35.31058 -32.27637 -30.24565 -27.51933 -26.73206 -22.55087 -21.47073 -19.66887 -17.66171 -17.07185 -16.40319 -15.76322 -15.61952 -14.96033 -14.88781 -13.57288 -13.18228 -12.92421 -12.76682 -12.42358 -12.05901 -12.01960 -11.15928 -10.76333 -10.16845 -8.66446 -8.49042 -6.26130 1.28649 1.40921 1.59245 1.74327 2.10276 2.26052 2.61884 3.03683 3.07353 4.27298 4.49921 4.55176 4.71078 4.81815 4.89929 5.09657 5.37086 5.69286 6.03213 6.62477 6.94802 7.41371 7.60429 8.51383 Molecular weight = 168.06amu Principal moments of inertia in cm(-1) A = 0.137802 B = 0.012753 C = 0.011758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 203.140732 B = 2194.966918 C = 2380.862894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.331 6.331 3 C -0.069 4.069 4 C -0.113 4.113 5 N -0.297 5.297 6 N -0.166 5.166 7 C -0.356 4.356 8 H 0.137 0.863 9 C -0.005 4.005 10 N -0.824 5.824 11 Si 1.021 2.979 12 H -0.266 1.266 13 H -0.273 1.273 14 H -0.246 1.246 15 C -0.093 4.093 16 H 0.120 0.880 17 H 0.046 0.954 18 H 0.046 0.954 19 H 0.178 0.822 20 H 0.278 0.722 21 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.093 -4.114 -0.194 4.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.244 6.244 3 C -0.125 4.125 4 C -0.286 4.286 5 N -0.132 5.132 6 N 0.062 4.938 7 C -0.487 4.487 8 H 0.154 0.846 9 C -0.216 4.216 10 N -0.452 5.452 11 Si 0.840 3.160 12 H -0.191 1.191 13 H -0.198 1.198 14 H -0.169 1.169 15 C -0.240 4.240 16 H 0.139 0.861 17 H 0.065 0.935 18 H 0.064 0.936 19 H 0.195 0.805 20 H 0.088 0.912 21 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 0.097 -2.885 -0.190 2.893 hybrid contribution -0.134 -0.306 -0.045 0.337 sum -0.037 -3.191 -0.235 3.200 Atomic orbital electron populations 1.23033 0.77857 1.04392 1.00835 1.85784 1.21954 1.24479 1.92209 1.18418 0.91438 0.84937 1.17688 1.24046 0.99989 0.90725 1.13828 1.78002 0.87862 1.20495 1.26792 1.44795 1.05358 1.02564 1.41130 1.20623 0.82197 0.92177 1.53689 0.84579 1.26868 1.03841 0.96808 0.94091 1.70369 1.30066 1.07617 1.37143 0.84549 0.74923 0.77471 0.79081 1.19051 1.19754 1.16873 1.21553 0.95939 0.86976 1.19509 0.86140 0.93540 0.93554 0.80530 0.91203 0.80677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.02 10.16 113.37 1.15 2.17 14 2 O -0.33 -13.87 10.59 -95.69 -1.01 -14.89 14 3 C -0.07 -3.40 6.97 22.19 0.15 -3.25 14 4 C -0.11 -5.79 11.09 85.38 0.95 -4.84 14 5 N -0.30 -17.67 10.43 -56.54 -0.59 -18.26 14 6 N -0.17 -9.55 3.74 -190.09 -0.71 -10.27 14 7 C -0.36 -19.46 10.24 84.01 0.86 -18.60 14 8 H 0.14 6.59 7.84 -2.91 -0.02 6.56 14 9 C 0.00 -0.24 5.50 84.95 0.47 0.23 14 10 N -0.82 -47.14 11.84 21.66 0.26 -46.89 14 11 Si 1.02 38.83 29.56 68.60 2.03 40.86 14 12 H -0.27 -9.78 7.11 99.48 0.71 -9.08 14 13 H -0.27 -10.09 7.11 99.48 0.71 -9.39 14 14 H -0.25 -8.54 7.11 99.48 0.71 -7.84 14 15 C -0.09 -4.81 11.49 83.32 0.96 -3.85 14 16 H 0.12 2.66 8.14 -2.39 -0.02 2.64 14 17 H 0.05 1.34 8.10 -2.39 -0.02 1.32 14 18 H 0.05 1.34 8.10 -2.39 -0.02 1.32 14 19 H 0.18 7.72 7.70 -2.91 -0.02 7.70 14 20 H 0.28 14.49 8.31 -92.71 -0.77 13.72 14 21 H 0.18 7.79 8.06 -2.91 -0.02 7.77 14 Total: -1.00 -68.57 199.14 5.73 -62.84 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: 1.22 Total: 14.74 kcal Atomic # 6 Polarization: -32.67 SS G_CDS: 4.54 Total: -28.13 kcal Atomic # 7 Polarization: -74.37 SS G_CDS: -1.04 Total: -75.42 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -1.01 Total: -14.89 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 2.03 Total: 40.86 kcal Total: -68.57 5.73 -62.84 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221139843.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.698 kcal (2) G-P(sol) polarization free energy of solvation -68.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds