Wall clock time and date at job start Mon Mar 30 2020 02:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00254 * 2 1 4 4 H 1.48502 * 109.47384 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47116 * 300.00369 * 3 2 1 6 6 H 1.48502 * 109.47022 * 60.00121 * 3 2 1 7 7 C 1.37873 * 119.99860 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00210 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00048 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47311 * 179.97438 * 9 7 2 11 11 H 1.08996 * 110.12198 * 306.67263 * 10 9 7 12 12 C 1.51092 * 110.14550 * 184.99820 * 10 9 7 13 13 C 1.33056 * 106.93768 * 240.79601 * 12 10 9 14 14 C 1.46541 * 109.52173 * 0.26644 * 13 12 10 15 15 O 1.21528 * 125.02258 * 179.73526 * 14 13 12 16 16 O 1.34623 * 109.94482 * 359.53329 * 14 13 12 17 17 H 0.97006 * 119.99511 * 359.97438 * 1 2 3 18 18 H 1.09004 * 109.47172 * 59.99787 * 9 7 2 19 19 H 1.09007 * 109.47252 * 300.00065 * 9 7 2 20 20 H 1.07995 * 126.52733 * 60.77642 * 12 10 9 21 21 H 1.08002 * 125.23452 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 1 2.9528 -3.5495 -0.8232 12 6 1.5091 -4.9758 -0.1254 13 6 1.7884 -5.6809 0.9678 14 6 2.6777 -4.9055 1.8368 15 8 3.1048 -5.2809 2.9108 16 8 2.9551 -3.7176 1.2673 17 1 -0.4850 0.8401 0.0004 18 1 0.6239 -2.5566 -0.8903 19 1 0.6246 -2.5571 0.8897 20 1 0.8765 -5.2836 -0.9449 21 1 1.4132 -6.6704 1.1838 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221693861.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:10 Heat of formation + Delta-G solvation = -64.999073 kcal Electronic energy + Delta-G solvation = -9188.563424 eV Core-core repulsion = 7223.230416 eV Total energy + Delta-G solvation = -1965.333007 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 168.057 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -40.70048 -36.93871 -33.42979 -32.72901 -29.95349 -25.44525 -22.56828 -20.88151 -20.42926 -16.87827 -16.33855 -15.71104 -15.06073 -14.38173 -13.83904 -13.04681 -12.82210 -12.21171 -11.84882 -11.34392 -10.74941 -10.64768 -10.56669 -10.01532 -9.87474 -9.31368 -9.05183 -8.51818 -6.14234 -4.17304 1.34816 3.26991 3.31334 3.35141 3.40359 3.85338 4.36800 4.42600 4.71077 5.23697 5.59668 5.70461 5.91114 6.15712 6.36050 7.10224 7.34988 7.47133 7.82107 7.98866 8.15947 8.86760 9.47768 10.97029 Molecular weight = 168.06amu Principal moments of inertia in cm(-1) A = 0.079149 B = 0.012830 C = 0.011834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 353.679511 B = 2181.810586 C = 2365.436328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.522 4.522 8 H 0.063 0.937 9 C 0.023 3.977 10 C 0.084 3.916 11 H 0.119 0.881 12 C -0.093 4.093 13 C -0.261 4.261 14 C 0.490 3.510 15 O -0.486 6.486 16 O -0.305 6.305 17 H 0.263 0.737 18 H 0.045 0.955 19 H 0.030 0.970 20 H 0.168 0.832 21 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.376 -7.106 -3.076 7.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.726 3.274 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.560 4.560 8 H 0.081 0.919 9 C -0.013 4.013 10 C 0.029 3.971 11 H 0.136 0.864 12 C -0.111 4.111 13 C -0.280 4.280 14 C 0.334 3.666 15 O -0.376 6.376 16 O -0.219 6.219 17 H 0.072 0.928 18 H 0.063 0.937 19 H 0.049 0.951 20 H 0.185 0.815 21 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 1.572 -6.948 -2.507 7.552 hybrid contribution 0.184 0.780 -0.073 0.805 sum 1.756 -6.169 -2.581 6.913 Atomic orbital electron populations 1.69956 1.06113 1.26976 1.50328 1.24998 0.94907 0.99523 0.94868 0.86425 0.80192 0.83165 0.77624 1.19523 1.20934 1.20874 1.21144 0.93403 0.90127 1.51306 0.91876 1.19410 0.92800 0.89964 0.99168 1.23275 0.95299 0.95282 0.83281 0.86398 1.25237 0.94028 0.94491 0.97339 1.23811 1.04051 1.02699 0.97451 1.21430 0.78926 0.80894 0.85322 1.90805 1.54330 1.71784 1.20638 1.87561 1.64455 1.35232 1.34677 0.92765 0.93704 0.95146 0.81470 0.82618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.83 13.29 55.43 0.74 -25.09 14 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 14 3 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 14 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 14 5 H -0.28 -6.57 7.11 56.52 0.40 -6.16 14 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 14 7 C -0.52 -14.17 8.98 -34.44 -0.31 -14.48 14 8 H 0.06 1.70 7.74 -52.49 -0.41 1.29 14 9 C 0.02 0.56 4.72 -27.88 -0.13 0.43 14 10 C 0.08 1.60 3.58 -27.69 -0.10 1.50 14 11 H 0.12 2.04 8.14 -51.93 -0.42 1.61 14 12 C -0.09 -1.35 10.51 -35.92 -0.38 -1.73 14 13 C -0.26 -4.03 10.86 -38.04 -0.41 -4.45 14 14 C 0.49 9.96 8.56 34.08 0.29 10.25 14 15 O -0.49 -11.09 18.04 -18.94 -0.34 -11.43 14 16 O -0.30 -6.72 10.80 -39.92 -0.43 -7.15 14 17 H 0.26 7.16 8.31 -40.82 -0.34 6.82 14 18 H 0.04 1.06 8.14 -51.93 -0.42 0.63 14 19 H 0.03 0.79 8.14 -51.93 -0.42 0.37 14 20 H 0.17 1.77 8.06 -52.49 -0.42 1.34 14 21 H 0.16 1.92 8.06 -52.49 -0.42 1.50 14 LS Contribution 202.26 15.07 3.05 3.05 Total: -1.00 -31.33 202.26 -4.80 -36.13 By element: Atomic # 1 Polarization: -3.18 SS G_CDS: -1.65 Total: -4.84 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: -1.14 Total: -6.94 kcal Atomic # 7 Polarization: -25.83 SS G_CDS: 0.74 Total: -25.09 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: -0.77 Total: -18.58 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 3.05 Total: 3.05 kcal Total: -31.33 -4.80 -36.13 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221693861.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.869 kcal (2) G-P(sol) polarization free energy of solvation -31.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds