Wall clock time and date at job start Mon Mar 30 2020 02:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86802 * 119.99698 * 2 1 4 4 H 1.48497 * 109.46865 * 269.99262 * 3 2 1 5 5 H 1.48502 * 109.47345 * 29.99301 * 3 2 1 6 6 H 1.48501 * 109.46902 * 149.99714 * 3 2 1 7 7 C 1.37876 * 120.00111 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99767 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99893 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.46777 * 180.02562 * 9 7 2 11 11 H 1.09000 * 110.12329 * 55.22272 * 10 9 7 12 12 C 1.51087 * 109.94834 * 177.07774 * 10 9 7 13 13 C 1.33054 * 106.93743 * 119.42888 * 12 10 9 14 14 C 1.46536 * 109.51930 * 359.60424 * 13 12 10 15 15 O 1.21535 * 125.02936 * 180.26596 * 14 13 12 16 16 O 1.34621 * 109.95193 * 0.26592 * 14 13 12 17 17 H 0.96998 * 120.00163 * 0.02562 * 1 2 3 18 18 H 1.09003 * 109.46738 * 60.00971 * 9 7 2 19 19 H 1.08997 * 109.47420 * 300.00959 * 9 7 2 20 20 H 1.08001 * 126.53562 * 299.29730 * 12 10 9 21 21 H 1.08002 * 125.24378 * 179.87442 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 0.0001 11 1 3.5959 -3.1848 -0.8403 12 6 5.5307 -2.6497 -0.0729 13 6 5.9666 -3.2593 1.0265 14 6 4.8231 -3.6553 1.8529 15 8 4.9001 -4.2282 2.9220 16 8 3.6745 -3.2907 1.2528 17 1 -0.4850 0.8400 -0.0004 18 1 3.8752 -0.6797 0.8896 19 1 3.8747 -0.6806 -0.8904 20 1 6.1395 -2.2438 -0.8672 21 1 7.0036 -3.4316 1.2741 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221693915.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:12 Heat of formation + Delta-G solvation = -82.692584 kcal Electronic energy + Delta-G solvation = -9225.173021 eV Core-core repulsion = 7259.072766 eV Total energy + Delta-G solvation = -1966.100255 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 168.057 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -42.26853 -38.61322 -35.31957 -34.28035 -32.23513 -27.45899 -24.01064 -22.36464 -21.87877 -19.02097 -18.15574 -17.46966 -16.65511 -16.13854 -15.35147 -14.82875 -14.37177 -14.01591 -13.88761 -13.43170 -12.47400 -12.38815 -11.94344 -11.75973 -11.49112 -11.38519 -10.78601 -10.56136 -8.29287 -6.36052 0.01562 1.37671 1.42330 1.52010 1.86248 2.31884 2.36569 3.05983 3.14028 3.30046 4.19414 4.21582 4.60676 4.79701 4.97410 5.12278 5.27104 5.54540 5.85714 6.22074 6.42537 6.72002 7.27371 8.87919 Molecular weight = 168.06amu Principal moments of inertia in cm(-1) A = 0.071548 B = 0.014057 C = 0.013068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 391.250146 B = 1991.479852 C = 2142.108283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.001 3.999 3 Si 0.955 3.045 4 H -0.252 1.252 5 H -0.292 1.292 6 H -0.242 1.242 7 C -0.536 4.536 8 H 0.028 0.972 9 C -0.011 4.011 10 C 0.080 3.920 11 H 0.133 0.867 12 C -0.056 4.056 13 C -0.251 4.251 14 C 0.472 3.528 15 O -0.525 6.525 16 O -0.345 6.345 17 H 0.267 0.733 18 H 0.024 0.976 19 H 0.076 0.924 20 H 0.229 0.771 21 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.280 -0.464 -4.206 14.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.196 4.196 3 Si 0.777 3.223 4 H -0.176 1.176 5 H -0.218 1.218 6 H -0.166 1.166 7 C -0.574 4.574 8 H 0.047 0.953 9 C -0.048 4.048 10 C 0.025 3.975 11 H 0.150 0.850 12 C -0.074 4.074 13 C -0.270 4.270 14 C 0.320 3.680 15 O -0.417 6.417 16 O -0.261 6.261 17 H 0.076 0.924 18 H 0.043 0.957 19 H 0.094 0.906 20 H 0.245 0.755 21 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 13.910 -0.648 -3.662 14.398 hybrid contribution -0.611 0.474 0.324 0.838 sum 13.298 -0.174 -3.338 13.712 Atomic orbital electron populations 1.70087 1.08670 1.28326 1.52215 1.26105 0.95674 1.03891 0.93889 0.85600 0.79373 0.77475 0.79827 1.17645 1.21827 1.16572 1.21338 0.91748 0.93268 1.51025 0.95324 1.19799 0.94772 0.90925 0.99311 1.23118 0.94564 0.96169 0.83616 0.84978 1.25549 0.93924 0.90051 0.97830 1.23900 1.00345 1.06021 0.96714 1.22403 0.85113 0.75516 0.84956 1.90776 1.87049 1.41520 1.22358 1.87569 1.33135 1.69177 1.36212 0.92446 0.95741 0.90571 0.75457 0.78539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.51 13.96 21.45 0.30 -59.21 14 2 C 0.00 0.06 5.47 84.65 0.46 0.53 14 3 Si 0.96 41.57 27.47 68.60 1.88 43.46 14 4 H -0.25 -10.04 7.11 99.48 0.71 -9.33 14 5 H -0.29 -12.98 7.11 99.48 0.71 -12.27 14 6 H -0.24 -9.55 6.54 99.48 0.65 -8.90 14 7 C -0.54 -29.93 9.49 25.60 0.24 -29.69 14 8 H 0.03 1.82 7.99 -2.91 -0.02 1.79 14 9 C -0.01 -0.45 3.79 29.85 0.11 -0.34 14 10 C 0.08 2.75 3.62 29.97 0.11 2.86 14 11 H 0.13 4.22 8.14 -2.39 -0.02 4.20 14 12 C -0.06 -1.19 10.50 24.65 0.26 -0.93 14 13 C -0.25 -6.25 10.86 23.27 0.25 -5.99 14 14 C 0.47 18.35 8.56 69.99 0.60 18.95 14 15 O -0.52 -23.82 18.04 19.39 0.35 -23.47 14 16 O -0.35 -15.16 10.75 -55.64 -0.60 -15.76 14 17 H 0.27 15.50 8.31 -92.71 -0.77 14.73 14 18 H 0.02 1.04 7.20 -2.39 -0.02 1.02 14 19 H 0.08 2.64 7.57 -2.39 -0.02 2.62 14 20 H 0.23 2.20 8.06 -2.91 -0.02 2.17 14 21 H 0.20 3.36 8.06 -2.91 -0.02 3.34 14 Total: -1.00 -75.36 198.59 5.14 -70.22 By element: Atomic # 1 Polarization: -1.79 SS G_CDS: 1.17 Total: -0.62 kcal Atomic # 6 Polarization: -16.66 SS G_CDS: 2.04 Total: -14.62 kcal Atomic # 7 Polarization: -59.51 SS G_CDS: 0.30 Total: -59.21 kcal Atomic # 8 Polarization: -38.98 SS G_CDS: -0.25 Total: -39.23 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 1.88 Total: 43.46 kcal Total: -75.36 5.14 -70.22 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221693915.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.478 kcal (2) G-P(sol) polarization free energy of solvation -75.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds