Wall clock time and date at job start Mon Mar 30 2020 02:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86804 * 119.99966 * 2 1 4 4 H 1.48499 * 109.46822 * 239.99793 * 3 2 1 5 5 H 1.48491 * 109.47069 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46883 * 120.00394 * 3 2 1 7 7 C 1.37874 * 119.99869 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99920 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00486 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.46768 * 60.00504 * 9 7 2 11 11 O 1.42901 * 109.47185 * 300.00784 * 9 7 2 12 12 C 1.50692 * 109.47622 * 180.02562 * 9 7 2 13 13 N 1.30501 * 125.64779 * 305.02749 * 12 9 7 14 14 C 1.34134 * 109.25535 * 179.97438 * 13 12 9 15 15 C 1.34668 * 108.01972 * 0.02562 * 14 13 12 16 16 N 1.35044 * 125.65329 * 125.02733 * 12 9 7 17 17 H 0.96995 * 126.39482 * 359.97438 * 16 12 9 18 18 H 0.96997 * 119.99684 * 0.02562 * 1 2 3 19 19 H 0.96705 * 114.00083 * 299.99731 * 11 9 7 20 20 H 1.08001 * 125.98356 * 179.97438 * 14 13 12 21 21 H 1.08003 * 126.58998 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6242 -2.5567 -0.8904 11 8 0.4299 -2.5751 1.1665 12 6 2.2303 -3.6446 -0.0005 13 7 3.1872 -3.8272 -0.8689 14 6 3.8586 -4.9462 -0.5586 15 6 3.2960 -5.4774 0.5436 16 7 2.2631 -4.6522 0.8980 17 1 1.6665 -4.7689 1.6538 18 1 -0.4849 0.8400 -0.0004 19 1 0.9222 -2.5299 1.9976 20 1 4.7019 -5.3506 -1.0987 21 1 3.6012 -6.3810 1.0503 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226047495.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:39 Heat of formation + Delta-G solvation = -21.966258 kcal Electronic energy + Delta-G solvation = -9362.278843 eV Core-core repulsion = 7431.104630 eV Total energy + Delta-G solvation = -1931.174213 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 168.064 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -42.77368 -37.64015 -34.39490 -33.20525 -31.14806 -28.35738 -25.04369 -22.23114 -21.37956 -19.44111 -18.75978 -16.71317 -16.24033 -16.01211 -15.19830 -14.83038 -14.40131 -14.30453 -13.41272 -12.95215 -12.79073 -12.11919 -11.55364 -10.90769 -10.82272 -10.78584 -10.57743 -9.15625 -8.17133 -6.42166 1.28408 1.41930 1.44819 1.53174 2.30117 2.38270 2.50515 3.06626 3.72820 4.23794 4.41389 4.60631 4.77240 5.26925 5.41991 5.65028 5.93999 5.98787 6.59141 6.68582 7.14239 7.34625 7.47563 8.86388 Molecular weight = 168.06amu Principal moments of inertia in cm(-1) A = 0.074753 B = 0.015312 C = 0.013493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 374.477060 B = 1828.146758 C = 2074.638007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.031 3.969 3 Si 0.965 3.035 4 H -0.274 1.274 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.566 4.566 8 H 0.051 0.949 9 C 0.310 3.690 10 H 0.046 0.954 11 O -0.566 6.566 12 C 0.188 3.812 13 N -0.532 5.532 14 C -0.069 4.069 15 C -0.053 4.053 16 N -0.556 5.556 17 H 0.429 0.571 18 H 0.266 0.734 19 H 0.362 0.638 20 H 0.188 0.812 21 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.756 -7.543 4.167 9.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.172 4.172 3 Si 0.790 3.210 4 H -0.199 1.199 5 H -0.202 1.202 6 H -0.192 1.192 7 C -0.605 4.605 8 H 0.069 0.931 9 C 0.251 3.749 10 H 0.064 0.936 11 O -0.369 6.369 12 C -0.078 4.078 13 N -0.253 5.253 14 C -0.216 4.216 15 C -0.186 4.186 16 N -0.160 5.160 17 H 0.269 0.731 18 H 0.075 0.925 19 H 0.207 0.793 20 H 0.205 0.795 21 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 4.298 -6.991 3.031 8.748 hybrid contribution 0.340 0.296 1.118 1.205 sum 4.637 -6.695 4.149 9.140 Atomic orbital electron populations 1.70163 1.07337 1.27913 1.47875 1.25836 0.95610 1.02684 0.93097 0.85523 0.78340 0.78206 0.78975 1.19940 1.20238 1.19199 1.21591 0.93071 0.91271 1.54556 0.93106 1.17507 0.85038 0.86549 0.85851 0.93622 1.86571 1.38290 1.96121 1.15910 1.24669 0.99613 0.93718 0.89757 1.70154 1.08005 1.19243 1.27948 1.22933 1.04121 0.94973 0.99615 1.23352 0.93462 1.00454 1.01377 1.43277 1.27383 1.19970 1.25418 0.73082 0.92501 0.79266 0.79531 0.76193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.79 12.84 21.45 0.28 -52.51 14 2 C 0.03 1.73 5.40 84.65 0.46 2.19 14 3 Si 0.97 44.19 29.54 68.60 2.03 46.22 14 4 H -0.27 -12.49 7.11 99.48 0.71 -11.79 14 5 H -0.28 -12.19 7.11 99.48 0.71 -11.49 14 6 H -0.27 -11.75 7.11 99.48 0.71 -11.05 14 7 C -0.57 -32.36 8.71 25.60 0.22 -32.14 14 8 H 0.05 2.98 7.74 -2.91 -0.02 2.95 14 9 C 0.31 16.42 3.38 29.10 0.10 16.52 14 10 H 0.05 2.74 8.14 -2.39 -0.02 2.72 14 11 O -0.57 -27.68 12.24 -148.98 -1.82 -29.51 14 12 C 0.19 8.60 7.14 138.12 0.99 9.58 14 13 N -0.53 -24.96 11.20 -188.13 -2.11 -27.07 14 14 C -0.07 -2.45 11.87 83.52 0.99 -1.46 14 15 C -0.05 -1.51 12.04 83.09 1.00 -0.51 14 16 N -0.56 -18.93 5.99 -186.28 -1.12 -20.05 14 17 H 0.43 11.83 8.56 -92.71 -0.79 11.04 14 18 H 0.27 14.75 8.31 -92.71 -0.77 13.98 14 19 H 0.36 15.05 9.00 -74.05 -0.67 14.38 14 20 H 0.19 5.25 8.06 -2.91 -0.02 5.22 14 21 H 0.22 3.78 8.06 -2.91 -0.02 3.76 14 Total: -1.00 -69.82 199.54 0.81 -69.01 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: -0.20 Total: 19.73 kcal Atomic # 6 Polarization: -9.58 SS G_CDS: 3.76 Total: -5.82 kcal Atomic # 7 Polarization: -96.68 SS G_CDS: -2.95 Total: -99.63 kcal Atomic # 8 Polarization: -27.68 SS G_CDS: -1.82 Total: -29.51 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -69.82 0.81 -69.01 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226047495.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.039 kcal (2) G-P(sol) polarization free energy of solvation -69.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds