Wall clock time and date at job start Mon Mar 30 2020 02:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99989 * 2 1 4 4 H 1.48501 * 109.46883 * 270.00023 * 3 2 1 5 5 H 1.48498 * 109.47023 * 30.00182 * 3 2 1 6 6 H 1.48499 * 109.46845 * 150.00120 * 3 2 1 7 7 C 1.37880 * 119.99900 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99691 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99914 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.46903 * 179.97438 * 9 7 2 11 11 C 1.38697 * 125.98234 * 89.99986 * 10 9 7 12 12 C 1.32867 * 107.91222 * 180.02562 * 11 10 9 13 13 N 1.38697 * 107.91273 * 0.24263 * 12 11 10 14 14 H 0.97001 * 125.97685 * 179.71427 * 13 12 11 15 15 C 1.34752 * 125.98409 * 270.01932 * 10 9 7 16 16 O 1.21800 * 125.94580 * 359.96190 * 15 10 9 17 17 H 0.96999 * 119.99841 * 359.97438 * 1 2 3 18 18 H 1.08998 * 109.47385 * 60.00048 * 9 7 2 19 19 H 1.09007 * 109.46980 * 299.99552 * 9 7 2 20 20 H 1.08000 * 126.04506 * 0.02562 * 11 10 9 21 21 H 1.08002 * 126.03891 * 179.97438 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 2.7326 -4.2321 1.1229 12 6 3.5539 -5.1918 0.7107 13 7 3.5559 -5.1851 -0.6762 14 1 4.0693 -5.7769 -1.2482 15 6 2.7179 -4.2143 -1.0898 16 8 2.4721 -3.9273 -2.2478 17 1 -0.4850 0.8401 0.0004 18 1 0.6247 -2.5571 -0.8897 19 1 0.6241 -2.5567 0.8904 20 1 2.5158 -3.9791 2.1502 21 1 4.1229 -5.8565 1.3439 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231930613.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:06 Heat of formation + Delta-G solvation = -16.030044 kcal Electronic energy + Delta-G solvation = -9316.609295 eV Core-core repulsion = 7385.692496 eV Total energy + Delta-G solvation = -1930.916800 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 168.064 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -42.90207 -37.69101 -36.09896 -34.26283 -30.28835 -28.84588 -25.43284 -22.69650 -21.63226 -19.14891 -18.76724 -16.91652 -16.78444 -16.18509 -15.63698 -15.10343 -14.48529 -14.04415 -13.48704 -13.07480 -12.73685 -12.67075 -12.26633 -12.00372 -11.34433 -10.79679 -10.71248 -8.60567 -8.26869 -6.47116 1.37238 1.40412 1.50362 1.62239 1.78401 2.05630 2.37003 2.99832 3.06332 4.36920 4.68881 4.74842 4.89540 5.00122 5.34295 5.55050 5.81774 5.89014 6.28132 6.60107 6.79355 7.21860 7.54418 8.77168 Molecular weight = 168.06amu Principal moments of inertia in cm(-1) A = 0.073380 B = 0.013846 C = 0.013600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 381.485274 B = 2021.749437 C = 2058.288970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.014 3.986 3 Si 0.975 3.025 4 H -0.280 1.280 5 H -0.269 1.269 6 H -0.262 1.262 7 C -0.556 4.556 8 H 0.053 0.947 9 C 0.270 3.730 10 N -0.525 5.525 11 C -0.028 4.028 12 C -0.010 4.010 13 N -0.626 5.626 14 H 0.440 0.560 15 C 0.612 3.388 16 O -0.644 6.644 17 H 0.272 0.728 18 H 0.005 0.995 19 H 0.047 0.953 20 H 0.199 0.801 21 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.284 -8.118 5.837 12.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.187 4.187 3 Si 0.799 3.201 4 H -0.206 1.206 5 H -0.194 1.194 6 H -0.186 1.186 7 C -0.594 4.594 8 H 0.071 0.929 9 C 0.150 3.850 10 N -0.242 5.242 11 C -0.151 4.151 12 C -0.134 4.134 13 N -0.269 5.269 14 H 0.282 0.718 15 C 0.313 3.687 16 O -0.528 6.528 17 H 0.081 0.919 18 H 0.023 0.977 19 H 0.065 0.935 20 H 0.216 0.784 21 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 6.827 -7.678 5.145 11.490 hybrid contribution 0.206 0.687 -0.523 0.888 sum 7.034 -6.991 4.622 10.941 Atomic orbital electron populations 1.70030 1.07524 1.28719 1.49948 1.25865 0.95895 1.03121 0.93773 0.85304 0.78722 0.77809 0.78310 1.20554 1.19402 1.18648 1.21598 0.93348 0.91557 1.52917 0.92871 1.18980 0.86802 0.82056 0.97164 1.45865 1.40592 1.31073 1.06676 1.22508 1.01486 0.97308 0.93807 1.22477 1.05042 1.03680 0.82162 1.43113 1.41789 1.33095 1.08932 0.71812 1.16724 0.83737 0.83371 0.84865 1.90924 1.70298 1.72666 1.18919 0.91913 0.97696 0.93499 0.78431 0.74621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.03 13.29 21.45 0.28 -54.75 14 2 C 0.01 0.78 5.46 84.65 0.46 1.24 14 3 Si 0.98 44.60 29.54 68.60 2.03 46.63 14 4 H -0.28 -12.81 7.11 99.48 0.71 -12.11 14 5 H -0.27 -11.60 7.11 99.48 0.71 -10.89 14 6 H -0.26 -11.47 7.11 99.48 0.71 -10.76 14 7 C -0.56 -32.57 9.39 25.60 0.24 -32.33 14 8 H 0.05 3.13 7.81 -2.91 -0.02 3.10 14 9 C 0.27 14.94 5.79 85.63 0.50 15.44 14 10 N -0.53 -24.34 2.76 -660.28 -1.82 -26.17 14 11 C -0.03 -0.90 11.49 82.43 0.95 0.05 14 12 C -0.01 -0.25 11.95 82.43 0.98 0.74 14 13 N -0.63 -19.68 6.15 -323.81 -1.99 -21.67 14 14 H 0.44 10.49 8.96 -92.71 -0.83 9.66 14 15 C 0.61 28.75 8.92 179.07 1.60 30.34 14 16 O -0.64 -36.82 17.85 -4.67 -0.08 -36.91 14 17 H 0.27 15.06 8.31 -92.71 -0.77 14.29 14 18 H 0.00 0.31 8.07 -2.39 -0.02 0.29 14 19 H 0.05 2.53 8.14 -2.38 -0.02 2.51 14 20 H 0.20 5.12 8.06 -2.91 -0.02 5.10 14 21 H 0.24 2.65 8.06 -2.91 -0.02 2.62 14 Total: -1.00 -77.13 201.32 3.55 -73.58 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: 0.41 Total: 3.81 kcal Atomic # 6 Polarization: 10.74 SS G_CDS: 4.73 Total: 15.47 kcal Atomic # 7 Polarization: -99.05 SS G_CDS: -3.53 Total: -102.58 kcal Atomic # 8 Polarization: -36.82 SS G_CDS: -0.08 Total: -36.91 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -77.13 3.55 -73.58 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231930613.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.550 kcal (2) G-P(sol) polarization free energy of solvation -77.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds