Wall clock time and date at job start Mon Mar 30 2020 02:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30515 * 1 3 3 Si 1.86799 * 120.00155 * 2 1 4 4 H 1.48503 * 109.47069 * 270.00426 * 3 2 1 5 5 H 1.48497 * 109.46959 * 30.00155 * 3 2 1 6 6 H 1.48502 * 109.47155 * 150.00186 * 3 2 1 7 7 C 1.40465 * 120.00119 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00082 * 179.97438 * 7 2 1 9 9 C 1.41027 * 119.99722 * 0.02562 * 7 2 1 10 10 O 1.21427 * 120.00065 * 359.97438 * 9 7 2 11 11 C 1.50703 * 119.99616 * 179.97438 * 9 7 2 12 12 C 1.53003 * 109.46728 * 179.97438 * 11 9 7 13 13 C 1.53786 * 113.61503 * 85.86370 * 12 11 9 14 14 C 1.54049 * 86.98426 * 140.01654 * 13 12 11 15 15 C 1.53781 * 113.61337 * 183.47164 * 12 11 9 16 16 H 0.97001 * 119.99878 * 359.97438 * 1 2 3 17 17 H 1.09000 * 109.47223 * 60.00022 * 11 9 7 18 18 H 1.08997 * 109.47305 * 299.99682 * 11 9 7 19 19 H 1.09002 * 112.85017 * 314.66753 * 12 11 9 20 20 H 1.08992 * 113.61675 * 254.61398 * 13 12 11 21 21 H 1.09000 * 113.60973 * 25.51686 * 13 12 11 22 22 H 1.09005 * 113.62125 * 220.02158 * 14 13 12 23 23 H 1.09003 * 113.61268 * 89.11946 * 14 13 12 24 24 H 1.08999 * 113.61567 * 334.48261 * 15 12 11 25 25 H 1.09000 * 113.61379 * 105.30384 * 15 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3051 0.0000 0.0000 3 14 2.2392 1.6177 0.0000 4 1 2.4866 2.0464 -1.4001 5 1 1.4367 2.6526 0.7001 6 1 3.5368 1.4401 0.7000 7 6 2.0075 -1.2164 -0.0005 8 1 3.0874 -1.2164 -0.0010 9 6 1.3023 -2.4378 -0.0016 10 8 0.0881 -2.4377 -0.0016 11 6 2.0559 -3.7429 -0.0028 12 6 1.0616 -4.9058 -0.0032 13 6 0.5835 -5.3070 -1.4087 14 6 0.6822 -6.7699 -0.9360 15 6 1.7303 -6.2880 0.0809 16 1 -0.4850 0.8401 0.0004 17 1 2.6826 -3.8014 0.8871 18 1 2.6825 -3.7998 -0.8928 19 1 0.2501 -4.7691 0.7116 20 1 -0.4341 -4.9865 -1.6318 21 1 1.2906 -5.0549 -2.1989 22 1 1.0843 -7.4464 -1.6902 23 1 -0.2330 -7.1429 -0.4762 24 1 2.7504 -6.3036 -0.3028 25 1 1.6392 -6.7583 1.0600 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232160649.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:54 Heat of formation + Delta-G solvation = -40.066867 kcal Electronic energy + Delta-G solvation = -9456.647488 eV Core-core repulsion = 7628.228717 eV Total energy + Delta-G solvation = -1828.418771 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 168.089 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.39641 -36.13664 -32.55190 -29.40210 -26.55177 -25.00164 -22.76550 -19.36460 -18.52702 -16.13998 -15.28050 -14.77666 -14.04772 -13.41326 -13.06629 -12.57098 -11.89547 -11.52220 -11.34807 -11.11994 -10.97223 -10.39928 -10.22128 -10.14425 -9.84907 -9.52301 -9.36089 -8.84092 -7.25559 -6.13094 -4.80401 3.09038 3.17328 3.21154 4.08943 4.34249 5.21224 5.26443 5.33941 5.48671 5.67258 6.04253 6.24340 6.26804 6.29626 6.54831 6.61972 6.65657 6.84304 6.99085 7.09219 7.30842 7.34127 8.17537 8.92232 9.01982 10.44717 10.70073 Molecular weight = 168.09amu Principal moments of inertia in cm(-1) A = 0.113179 B = 0.011541 C = 0.010944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 247.336842 B = 2425.589980 C = 2557.970210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.744 5.744 2 C 0.083 3.917 3 Si 0.903 3.097 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.542 4.542 8 H 0.066 0.934 9 C 0.364 3.636 10 O -0.544 6.544 11 C -0.151 4.151 12 C -0.087 4.087 13 C -0.129 4.129 14 C -0.144 4.144 15 C -0.144 4.144 16 H 0.271 0.729 17 H 0.061 0.939 18 H 0.061 0.939 19 H 0.089 0.911 20 H 0.064 0.936 21 H 0.072 0.928 22 H 0.057 0.943 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.593 -5.727 -0.844 6.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.373 5.373 2 C -0.139 4.139 3 Si 0.727 3.273 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.574 4.574 8 H 0.085 0.915 9 C 0.259 3.741 10 O -0.432 6.432 11 C -0.189 4.189 12 C -0.105 4.105 13 C -0.166 4.166 14 C -0.181 4.181 15 C -0.181 4.181 16 H 0.082 0.918 17 H 0.079 0.921 18 H 0.079 0.921 19 H 0.107 0.893 20 H 0.083 0.917 21 H 0.090 0.910 22 H 0.076 0.924 23 H 0.092 0.908 24 H 0.092 0.908 25 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.835 -5.686 -0.841 6.409 hybrid contribution 0.703 0.834 -0.015 1.091 sum 3.537 -4.852 -0.856 6.065 Atomic orbital electron populations 1.69960 1.07467 1.27671 1.32192 1.26011 0.94546 1.00821 0.92532 0.86451 0.80493 0.81312 0.79051 1.19539 1.20304 1.18678 1.20860 0.94809 0.92248 1.49445 0.91532 1.19502 0.89012 0.87787 0.77838 1.90373 1.15608 1.88929 1.48340 1.22033 0.98646 0.97596 1.00649 1.22226 0.98354 0.92469 0.97447 1.22880 1.01645 0.94525 0.97587 1.22865 0.99214 0.97112 0.98950 1.23016 0.98256 0.98225 0.98621 0.91812 0.92064 0.92089 0.89261 0.91697 0.90959 0.92443 0.90827 0.90790 0.92429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -22.12 11.72 55.57 0.65 -21.47 15 2 C 0.08 2.33 5.50 -17.27 -0.10 2.23 15 3 Si 0.90 19.96 29.56 -169.99 -5.03 14.93 15 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 15 5 H -0.28 -5.98 7.11 56.52 0.40 -5.57 15 6 H -0.26 -5.64 7.11 56.52 0.40 -5.24 15 7 C -0.54 -15.52 9.22 -37.69 -0.35 -15.87 15 8 H 0.07 1.76 7.85 -52.49 -0.41 1.35 15 9 C 0.36 10.45 6.90 -33.25 -0.23 10.22 15 10 O -0.54 -17.41 14.31 5.43 0.08 -17.33 15 11 C -0.15 -3.44 5.40 -27.88 -0.15 -3.59 15 12 C -0.09 -1.78 3.11 -89.80 -0.28 -2.06 15 13 C -0.13 -2.43 7.65 -25.77 -0.20 -2.63 15 14 C -0.14 -2.22 8.09 -25.78 -0.21 -2.43 15 15 C -0.14 -2.33 7.64 -25.92 -0.20 -2.52 15 16 H 0.27 7.24 8.29 -40.82 -0.34 6.90 15 17 H 0.06 1.31 8.14 -51.93 -0.42 0.89 15 18 H 0.06 1.30 7.88 -51.93 -0.41 0.89 15 19 H 0.09 2.02 7.73 -51.93 -0.40 1.61 15 20 H 0.06 1.30 8.14 -51.93 -0.42 0.88 15 21 H 0.07 1.33 7.92 -51.93 -0.41 0.92 15 22 H 0.06 0.78 8.14 -51.93 -0.42 0.35 15 23 H 0.07 1.07 8.14 -51.93 -0.42 0.65 15 24 H 0.07 1.12 8.10 -51.93 -0.42 0.70 15 25 H 0.06 0.86 8.14 -51.93 -0.42 0.43 15 LS Contribution 218.91 15.07 3.30 3.30 Total: -1.00 -31.87 218.91 -6.00 -37.88 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: -3.30 Total: -0.67 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: -1.71 Total: -16.64 kcal Atomic # 7 Polarization: -22.12 SS G_CDS: 0.65 Total: -21.47 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: 0.08 Total: -17.33 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.03 Total: 14.93 kcal Total LS contribution 3.30 Total: 3.30 kcal Total: -31.87 -6.00 -37.88 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232160649.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.191 kcal (2) G-P(sol) polarization free energy of solvation -31.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds