Wall clock time and date at job start Mon Mar 30 2020 02:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29954 * 126.28654 * 2 1 4 4 O 1.21293 * 110.25286 * 180.02562 * 3 2 1 5 5 C 1.33642 * 109.81058 * 359.97438 * 4 3 2 6 6 C 1.50698 * 126.55339 * 180.02562 * 5 4 3 7 7 C 1.50704 * 109.47170 * 269.97680 * 6 5 4 8 8 H 1.07996 * 119.99800 * 359.97438 * 7 6 5 9 9 C 1.37877 * 119.99659 * 179.97438 * 7 6 5 10 10 N 1.31512 * 120.00358 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99497 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.47223 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47054 * 120.00159 * 11 9 7 14 14 H 1.48499 * 109.47114 * 239.99579 * 11 9 7 15 15 N 1.31130 * 106.90015 * 0.02562 * 5 4 3 16 16 H 1.08999 * 109.47105 * 89.97733 * 1 2 3 17 17 H 1.09005 * 109.47013 * 209.97845 * 1 2 3 18 18 H 1.08996 * 109.47115 * 329.97748 * 1 2 3 19 19 H 1.09000 * 109.46935 * 29.97313 * 6 5 4 20 20 H 1.08997 * 109.47416 * 149.97136 * 6 5 4 21 21 H 0.96999 * 119.99680 * 180.02562 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4419 0.7125 -0.0005 5 6 3.5299 -0.6210 -0.0003 6 6 4.7969 -1.4368 -0.0003 7 6 5.2189 -1.7095 -1.4211 8 1 4.6284 -1.3303 -2.2420 9 6 6.3589 -2.4430 -1.6729 10 7 7.0783 -2.9043 -0.6733 11 14 6.8816 -2.7815 -3.4341 12 1 5.9093 -2.1582 -4.3675 13 1 8.2312 -2.2083 -3.6687 14 1 6.9195 -4.2478 -3.6660 15 7 2.3030 -1.0840 -0.0002 16 1 -0.3633 0.0004 -1.0277 17 1 -0.3633 -0.8902 0.5135 18 1 -0.3633 0.8897 0.5142 19 1 5.5843 -0.8849 0.5130 20 1 4.6208 -2.3815 0.5141 21 1 7.8804 -3.4200 -0.8505 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235800262.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:38 Heat of formation + Delta-G solvation = 50.784856 kcal Electronic energy + Delta-G solvation = -9148.730716 eV Core-core repulsion = 7220.711228 eV Total energy + Delta-G solvation = -1928.019488 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 168.064 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -44.71390 -35.30232 -33.91871 -32.13864 -29.08867 -28.14912 -24.02619 -22.57043 -20.48712 -17.47604 -16.58939 -16.24814 -14.84937 -13.78752 -13.39039 -13.25324 -12.51752 -12.34651 -12.11689 -11.30923 -11.04103 -10.79746 -10.63382 -10.28626 -10.08619 -9.79983 -8.90095 -8.62243 -6.25310 -4.30842 1.99463 3.01220 3.23075 3.30842 3.36417 3.83494 4.30665 4.40904 4.77012 5.13105 5.60496 5.66597 5.74467 6.18587 6.63557 6.72927 7.12552 7.19981 7.68578 7.92056 8.69734 8.98685 9.34034 10.85176 Molecular weight = 168.06amu Principal moments of inertia in cm(-1) A = 0.087420 B = 0.011914 C = 0.011479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 320.216413 B = 2349.577094 C = 2438.624573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.153 3.847 3 N -0.414 5.414 4 O 0.058 5.942 5 C 0.238 3.762 6 C 0.100 3.900 7 C -0.523 4.523 8 H 0.062 0.938 9 C 0.066 3.934 10 N -0.888 5.888 11 Si 0.907 3.093 12 H -0.271 1.271 13 H -0.280 1.280 14 H -0.281 1.281 15 N -0.511 5.511 16 H 0.081 0.919 17 H 0.085 0.915 18 H 0.078 0.922 19 H 0.058 0.942 20 H 0.069 0.931 21 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.730 3.145 0.616 7.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.120 4.120 3 N -0.129 5.129 4 O 0.004 5.996 5 C 0.020 3.980 6 C 0.061 3.939 7 C -0.562 4.562 8 H 0.080 0.920 9 C -0.138 4.138 10 N -0.525 5.525 11 Si 0.734 3.266 12 H -0.196 1.196 13 H -0.206 1.206 14 H -0.206 1.206 15 N -0.245 5.245 16 H 0.100 0.900 17 H 0.104 0.896 18 H 0.097 0.903 19 H 0.076 0.924 20 H 0.087 0.913 21 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.183 3.539 0.671 8.036 hybrid contribution 0.482 -0.291 -0.935 1.091 sum -6.702 3.248 -0.264 7.452 Atomic orbital electron populations 1.19984 0.84010 1.03752 1.03549 1.25823 1.00180 0.84678 1.01293 1.74489 0.90007 1.24540 1.23851 1.85236 1.21633 1.26183 1.66513 1.30156 0.98004 0.80846 0.88999 1.18217 0.82457 0.93043 1.00173 1.20840 1.09781 1.35461 0.90126 0.92017 1.24934 0.95782 0.94938 0.98116 1.69933 1.16167 1.35489 1.30946 0.86285 0.78549 0.78161 0.83608 1.19594 1.20606 1.20635 1.71954 1.00210 1.28775 1.23592 0.90025 0.89598 0.90275 0.92355 0.91318 0.92315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.75 10.51 36.01 0.38 -0.37 14 2 C 0.15 3.03 8.22 -156.37 -1.28 1.74 14 3 N -0.41 -8.73 12.16 30.90 0.38 -8.35 14 4 O 0.06 1.29 11.31 18.11 0.20 1.50 14 5 C 0.24 5.53 7.70 -13.06 -0.10 5.43 14 6 C 0.10 2.48 5.60 -29.03 -0.16 2.32 14 7 C -0.52 -14.23 9.09 -34.44 -0.31 -14.54 14 8 H 0.06 1.70 7.74 -52.49 -0.41 1.29 14 9 C 0.07 1.77 5.46 -17.82 -0.10 1.68 14 10 N -0.89 -24.76 13.29 55.43 0.74 -24.03 14 11 Si 0.91 20.86 29.54 -169.99 -5.02 15.84 14 12 H -0.27 -6.23 7.11 56.52 0.40 -5.83 14 13 H -0.28 -6.33 7.11 56.52 0.40 -5.93 14 14 H -0.28 -6.37 7.11 56.52 0.40 -5.97 14 15 N -0.51 -11.52 11.55 -9.87 -0.11 -11.63 14 16 H 0.08 0.99 8.14 -51.93 -0.42 0.57 14 17 H 0.09 1.05 8.14 -51.93 -0.42 0.63 14 18 H 0.08 0.92 8.14 -51.93 -0.42 0.50 14 19 H 0.06 1.44 8.14 -51.93 -0.42 1.02 14 20 H 0.07 1.76 8.14 -51.93 -0.42 1.34 14 21 H 0.27 6.99 8.31 -40.82 -0.34 6.65 14 LS Contribution 202.50 15.07 3.05 3.05 Total: -1.00 -29.09 202.50 -4.00 -33.09 By element: Atomic # 1 Polarization: -4.08 SS G_CDS: -1.65 Total: -5.73 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: -1.58 Total: -3.74 kcal Atomic # 7 Polarization: -45.01 SS G_CDS: 1.00 Total: -44.01 kcal Atomic # 8 Polarization: 1.29 SS G_CDS: 0.20 Total: 1.50 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 3.05 Total: 3.05 kcal Total: -29.09 -4.00 -33.09 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235800262.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.876 kcal (2) G-P(sol) polarization free energy of solvation -29.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds