Wall clock time and date at job start Mon Mar 30 2020 02:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47466 * 179.97438 * 10 9 7 12 12 N 1.31133 * 126.54887 * 89.99567 * 11 10 9 13 13 C 1.34501 * 105.61194 * 180.02562 * 12 11 10 14 14 N 1.29946 * 107.42559 * 0.02562 * 13 12 11 15 15 O 1.21300 * 110.25133 * 359.70639 * 14 13 12 16 16 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 17 17 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 18 18 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 19 19 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 20 20 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 21 21 H 1.08002 * 126.28491 * 180.02562 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 7 1.1007 -5.6438 -1.0520 13 6 0.4723 -6.7313 -0.5708 14 7 0.5119 -6.6616 0.7262 15 8 1.0979 -5.6584 1.0751 16 1 -0.4850 0.8401 0.0004 17 1 0.6239 -2.5567 0.8903 18 1 0.6246 -2.5571 -0.8897 19 1 2.8718 -3.6044 -0.8895 20 1 2.8718 -3.6044 0.8904 21 1 0.0183 -7.5179 -1.1551 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236175325.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:20 Heat of formation + Delta-G solvation = 32.997309 kcal Electronic energy + Delta-G solvation = -9066.240883 eV Core-core repulsion = 7137.450069 eV Total energy + Delta-G solvation = -1928.790814 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 168.064 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -46.50535 -36.92888 -36.03320 -34.23804 -31.84368 -27.70747 -25.32824 -24.27419 -22.48677 -19.11848 -18.70934 -18.23634 -16.48614 -16.09765 -15.61188 -14.81647 -14.29376 -13.58780 -13.36071 -12.84446 -12.81851 -12.50262 -12.08275 -11.92511 -11.87545 -11.30893 -10.82886 -10.56637 -8.19616 -6.31384 0.17826 1.34464 1.46666 1.47521 1.60470 1.89875 2.44961 2.98678 3.16091 3.33032 4.18844 4.47768 4.55532 4.80932 4.95507 5.01564 5.45287 5.55095 5.79071 6.14563 6.84865 7.17153 7.38892 8.93079 Molecular weight = 168.06amu Principal moments of inertia in cm(-1) A = 0.124369 B = 0.010093 C = 0.009912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 225.081810 B = 2773.646019 C = 2824.308780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.002 4.002 3 Si 0.970 3.030 4 H -0.254 1.254 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.537 4.537 8 H 0.079 0.921 9 C 0.031 3.969 10 C -0.015 4.015 11 C 0.207 3.793 12 N -0.520 5.520 13 C 0.153 3.847 14 N -0.417 5.417 15 O 0.054 5.946 16 H 0.263 0.737 17 H -0.002 1.002 18 H -0.006 1.006 19 H 0.114 0.886 20 H 0.115 0.885 21 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.173 -7.582 -0.286 8.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.199 4.199 3 Si 0.795 3.205 4 H -0.177 1.177 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.575 4.575 8 H 0.097 0.903 9 C -0.007 4.007 10 C -0.054 4.054 11 C -0.012 4.012 12 N -0.254 5.254 13 C -0.140 4.140 14 N -0.130 5.130 15 O 0.002 5.998 16 H 0.072 0.928 17 H 0.016 0.984 18 H 0.013 0.987 19 H 0.132 0.868 20 H 0.133 0.867 21 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges 3.649 -8.168 -0.178 8.948 hybrid contribution -0.164 0.880 -0.056 0.897 sum 3.485 -7.288 -0.234 8.082 Atomic orbital electron populations 1.70122 1.08082 1.27864 1.51519 1.26010 0.95687 1.03636 0.94608 0.85317 0.79406 0.78407 0.77418 1.17744 1.20893 1.20750 1.21613 0.94205 0.90988 1.50686 0.90309 1.18971 0.94064 0.91996 0.95660 1.20505 0.96747 0.81848 1.06329 1.29592 0.94379 0.97179 0.80062 1.72031 1.17251 1.06575 1.29562 1.28253 0.98641 0.98418 0.88665 1.74591 1.16432 1.04456 1.17505 1.85261 1.52492 1.25548 1.36501 0.92783 0.98393 0.98727 0.86784 0.86693 0.71843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.70 13.29 21.45 0.28 -55.41 14 2 C 0.00 -0.08 5.46 84.66 0.46 0.38 14 3 Si 0.97 42.30 29.54 68.60 2.03 44.32 14 4 H -0.25 -10.28 7.11 99.48 0.71 -9.57 14 5 H -0.28 -12.23 7.11 99.48 0.71 -11.53 14 6 H -0.28 -12.12 7.11 99.48 0.71 -11.41 14 7 C -0.54 -28.33 9.11 25.60 0.23 -28.10 14 8 H 0.08 3.81 7.74 -2.91 -0.02 3.79 14 9 C 0.03 1.56 4.95 29.85 0.15 1.71 14 10 C -0.02 -0.57 5.78 29.85 0.17 -0.40 14 11 C 0.21 7.62 7.77 88.38 0.69 8.31 14 12 N -0.52 -18.65 11.55 -315.45 -3.64 -22.29 14 13 C 0.15 4.58 13.11 180.59 2.37 6.95 14 14 N -0.42 -14.16 12.16 -70.51 -0.86 -15.02 14 15 O 0.05 1.96 11.31 74.81 0.85 2.80 14 16 H 0.26 14.75 8.31 -92.71 -0.77 13.98 14 17 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 14 18 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 14 19 H 0.11 3.91 8.14 -2.39 -0.02 3.89 14 20 H 0.11 3.69 8.14 -2.39 -0.02 3.67 14 21 H 0.27 4.95 8.06 -2.91 -0.02 4.93 14 Total: -1.00 -63.44 202.02 3.95 -59.49 By element: Atomic # 1 Polarization: -3.95 SS G_CDS: 1.23 Total: -2.73 kcal Atomic # 6 Polarization: -15.23 SS G_CDS: 4.07 Total: -11.16 kcal Atomic # 7 Polarization: -88.51 SS G_CDS: -4.22 Total: -92.73 kcal Atomic # 8 Polarization: 1.96 SS G_CDS: 0.85 Total: 2.80 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.32 kcal Total: -63.44 3.95 -59.49 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236175325.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.489 kcal (2) G-P(sol) polarization free energy of solvation -63.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds