Wall clock time and date at job start Mon Mar 30 2020 02:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31337 * 1 3 3 Si 1.86793 * 119.99572 * 2 1 4 4 H 1.48501 * 109.47769 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46916 * 120.00419 * 3 2 1 6 6 H 1.48501 * 109.46846 * 239.99586 * 3 2 1 7 7 C 1.38937 * 119.99813 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00059 * 203.50437 * 7 2 1 9 9 N 1.37560 * 119.99839 * 23.50991 * 7 2 1 10 10 C 1.36272 * 126.51583 * 19.67677 * 9 7 2 11 11 N 1.30486 * 108.51097 * 180.02562 * 10 9 7 12 12 C 1.34245 * 109.40252 * 359.97438 * 11 10 9 13 13 C 1.50703 * 125.86036 * 179.97438 * 12 11 10 14 14 O 1.42901 * 109.47383 * 180.02562 * 13 12 11 15 15 C 1.34638 * 108.27877 * 359.73982 * 12 11 10 16 16 H 0.97001 * 120.00069 * 185.86418 * 1 2 3 17 17 H 1.07994 * 125.74220 * 359.97438 * 10 9 7 18 18 H 1.08998 * 109.47098 * 300.03182 * 13 12 11 19 19 H 1.09004 * 109.46765 * 60.03066 * 13 12 11 20 20 H 0.96698 * 114.00175 * 180.02562 * 14 13 12 21 21 H 1.08003 * 126.58128 * 180.26633 * 15 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2472 1.6177 0.0000 4 1 1.2823 2.7465 0.0006 5 1 3.1010 1.6964 1.2125 6 1 3.1010 1.6964 -1.2125 7 6 2.0080 -1.2033 0.0005 8 1 3.0208 -1.2419 0.3736 9 7 1.4058 -2.3453 -0.4742 10 6 0.3222 -2.4081 -1.2981 11 7 0.0469 -3.6631 -1.5256 12 6 0.9255 -4.4383 -0.8703 13 6 0.9482 -5.9451 -0.8746 14 8 2.0283 -6.4076 -0.0612 15 6 1.7860 -3.6384 -0.2127 16 1 -0.4850 -0.8356 0.0858 17 1 -0.2182 -1.5616 -1.6953 18 1 0.0064 -6.3238 -0.4776 19 1 1.0827 -6.3035 -1.8952 20 1 2.1039 -7.3707 -0.0181 21 1 2.6145 -3.9535 0.4043 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236516152.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:33 Heat of formation + Delta-G solvation = -23.183225 kcal Electronic energy + Delta-G solvation = -9287.077135 eV Core-core repulsion = 7355.850150 eV Total energy + Delta-G solvation = -1931.226985 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 168.064 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -42.61134 -37.74516 -36.16360 -33.00898 -30.70606 -27.61864 -26.10258 -22.48538 -21.02000 -20.44909 -18.04774 -17.35881 -16.34266 -15.85735 -15.25313 -15.05673 -14.83717 -14.37919 -13.84439 -12.87601 -12.73007 -12.16456 -11.93251 -11.54518 -11.03398 -10.79744 -10.49420 -9.33158 -9.04152 -6.67037 1.22895 1.50522 1.75560 1.81773 2.21206 2.26106 2.71707 2.96239 3.24962 4.16169 4.37572 4.47562 4.65663 4.68048 5.06851 5.15520 5.59039 5.83782 6.09568 6.65050 7.00249 7.15419 7.45071 8.01529 Molecular weight = 168.06amu Principal moments of inertia in cm(-1) A = 0.105376 B = 0.013221 C = 0.012137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 265.652217 B = 2117.324964 C = 2306.448670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C -0.008 4.008 3 Si 1.141 2.859 4 H -0.271 1.271 5 H -0.255 1.255 6 H -0.263 1.263 7 C -0.463 4.463 8 H 0.110 0.890 9 N -0.280 5.280 10 C 0.082 3.918 11 N -0.527 5.527 12 C -0.056 4.056 13 C 0.187 3.813 14 O -0.584 6.584 15 C -0.109 4.109 16 H 0.274 0.726 17 H 0.184 0.816 18 H 0.063 0.937 19 H 0.066 0.934 20 H 0.403 0.597 21 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.996 -4.160 0.078 5.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.216 4.216 3 Si 0.955 3.045 4 H -0.196 1.196 5 H -0.179 1.179 6 H -0.187 1.187 7 C -0.591 4.591 8 H 0.128 0.872 9 N 0.054 4.946 10 C -0.195 4.195 11 N -0.250 5.250 12 C -0.191 4.191 13 C 0.108 3.892 14 O -0.392 6.392 15 C -0.249 4.249 16 H 0.086 0.914 17 H 0.201 0.799 18 H 0.081 0.919 19 H 0.084 0.916 20 H 0.253 0.747 21 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 3.246 -2.008 -0.346 3.833 hybrid contribution 0.444 -2.009 0.548 2.129 sum 3.690 -4.017 0.203 5.458 Atomic orbital electron populations 1.70784 1.08281 1.32134 1.37347 1.28587 0.95933 1.06343 0.90725 0.82665 0.74141 0.68541 0.79118 1.19572 1.17896 1.18739 1.21284 1.01904 0.86979 1.48931 0.87249 1.42079 1.19506 1.06050 1.26937 1.24567 0.96528 0.95733 1.02675 1.69766 1.27771 1.00943 1.26489 1.20702 0.97134 0.96601 1.04671 1.19689 0.89336 0.85920 0.94224 1.86385 1.52191 1.28899 1.71758 1.22397 1.07299 0.83462 1.11792 0.91377 0.79909 0.91854 0.91629 0.74667 0.81907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -47.62 12.58 21.65 0.27 -47.35 14 2 C -0.01 -0.40 5.21 84.93 0.44 0.05 14 3 Si 1.14 42.96 29.98 68.60 2.06 45.02 14 4 H -0.27 -10.11 7.11 99.48 0.71 -9.41 14 5 H -0.25 -8.66 7.11 99.48 0.71 -7.96 14 6 H -0.26 -9.29 7.11 99.48 0.71 -8.59 14 7 C -0.46 -25.37 10.01 83.96 0.84 -24.53 14 8 H 0.11 5.68 7.93 -2.91 -0.02 5.66 14 9 N -0.28 -15.80 2.84 -353.65 -1.01 -16.80 14 10 C 0.08 4.57 10.34 179.87 1.86 6.43 14 11 N -0.53 -28.15 11.24 -187.35 -2.11 -30.26 14 12 C -0.06 -2.77 7.06 41.37 0.29 -2.47 14 13 C 0.19 6.66 7.67 71.24 0.55 7.21 14 14 O -0.58 -18.40 12.94 -148.98 -1.93 -20.33 14 15 C -0.11 -5.69 10.82 83.01 0.90 -4.79 14 16 H 0.27 16.05 6.38 -92.71 -0.59 15.46 14 17 H 0.18 10.19 6.78 -2.91 -0.02 10.17 14 18 H 0.06 2.04 8.14 -2.39 -0.02 2.02 14 19 H 0.07 2.08 8.14 -2.39 -0.02 2.06 14 20 H 0.40 7.19 9.12 -74.06 -0.68 6.51 14 21 H 0.16 7.92 7.85 -2.91 -0.02 7.89 14 Total: -1.00 -66.92 196.35 2.92 -64.00 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: 0.75 Total: 23.83 kcal Atomic # 6 Polarization: -22.99 SS G_CDS: 4.88 Total: -18.11 kcal Atomic # 7 Polarization: -91.57 SS G_CDS: -2.84 Total: -94.41 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: -1.93 Total: -20.33 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.06 Total: 45.02 kcal Total: -66.92 2.92 -64.00 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236516152.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.818 kcal (2) G-P(sol) polarization free energy of solvation -66.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds