Wall clock time and date at job start Mon Mar 30 2020 02:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30692 * 1 3 3 Si 1.86795 * 120.00505 * 2 1 4 4 H 1.48502 * 109.46871 * 270.00153 * 3 2 1 5 5 H 1.48496 * 109.47058 * 29.99944 * 3 2 1 6 6 H 1.48494 * 109.47339 * 150.00035 * 3 2 1 7 7 C 1.40308 * 119.99572 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00411 * 162.09577 * 7 2 1 9 9 C 1.40079 * 119.99937 * 342.10454 * 7 2 1 10 10 C 1.33707 * 118.24828 * 330.29049 * 9 7 2 11 11 C 1.50128 * 123.49428 * 179.62248 * 10 9 7 12 12 C 1.52819 * 110.21316 * 16.91356 * 11 10 9 13 13 C 1.53334 * 108.74130 * 310.27766 * 12 11 10 14 14 C 1.50125 * 118.25142 * 150.27596 * 9 7 2 15 15 H 1.08997 * 109.36829 * 77.20081 * 14 9 7 16 16 O 1.42906 * 109.36303 * 317.60033 * 14 9 7 17 17 H 0.96997 * 119.99625 * 359.97438 * 1 2 3 18 18 H 1.07996 * 118.25107 * 359.33921 * 10 9 7 19 19 H 1.09009 * 109.35994 * 137.30037 * 11 10 9 20 20 H 1.08997 * 109.36285 * 256.90154 * 11 10 9 21 21 H 1.09000 * 109.68088 * 190.41301 * 12 11 10 22 22 H 1.09007 * 109.55258 * 70.06084 * 12 11 10 23 23 H 1.08999 * 109.61444 * 308.70978 * 13 12 11 24 24 H 1.09002 * 109.76464 * 188.26283 * 13 12 11 25 25 H 0.96696 * 114.00091 * 59.99647 * 16 14 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2410 1.6176 0.0000 4 1 2.4885 2.0462 -1.4001 5 1 1.4386 2.6526 0.7000 6 1 3.5385 1.4400 0.7000 7 6 2.0084 -1.2152 0.0005 8 1 3.0491 -1.2381 -0.2870 9 6 1.3587 -2.3987 0.3738 10 6 0.3561 -2.3194 1.2549 11 6 -0.4253 -3.5100 1.7301 12 6 0.3319 -4.7991 1.4135 13 6 0.7587 -4.7708 -0.0590 14 6 1.8251 -3.6884 -0.2369 15 1 2.7472 -4.0061 0.2497 16 8 2.0717 -3.4908 -1.6306 17 1 -0.4849 0.8400 0.0004 18 1 0.0975 -1.3478 1.6489 19 1 -0.5799 -3.4345 2.8065 20 1 -1.3928 -3.5310 1.2286 21 1 -0.3155 -5.6580 1.5905 22 1 1.2147 -4.8692 2.0491 23 1 -0.1034 -4.5418 -0.6855 24 1 1.1699 -5.7398 -0.3422 25 1 2.7458 -2.8239 -1.8200 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238714108.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:24 Heat of formation + Delta-G solvation = -75.925157 kcal Electronic energy + Delta-G solvation = -9793.427413 eV Core-core repulsion = 7963.453710 eV Total energy + Delta-G solvation = -1829.973703 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 168.089 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.57555 -36.16497 -35.40124 -31.48827 -30.10784 -26.83360 -23.17201 -22.80547 -19.73196 -18.16596 -17.80317 -16.80823 -15.81010 -15.13478 -14.66785 -14.15925 -13.63327 -13.56067 -13.24578 -12.93030 -12.55953 -12.29406 -12.03554 -11.79662 -11.49060 -11.09677 -10.75499 -10.41829 -9.11441 -8.42965 -6.15975 1.30609 1.38382 1.50489 2.05290 2.29039 3.24607 3.66033 4.14803 4.22717 4.48659 4.71006 4.80917 4.89295 5.01062 5.14668 5.20637 5.24778 5.34500 5.54178 5.64951 6.12406 6.37676 6.88036 7.02978 7.13718 7.49642 8.57786 Molecular weight = 168.09amu Principal moments of inertia in cm(-1) A = 0.063039 B = 0.017636 C = 0.014950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.065811 B = 1587.235761 C = 1872.517651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.031 3.969 3 Si 0.968 3.032 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.260 1.260 7 C -0.517 4.517 8 H 0.066 0.934 9 C -0.014 4.014 10 C -0.315 4.315 11 C -0.057 4.057 12 C -0.101 4.101 13 C -0.101 4.101 14 C 0.139 3.861 15 H 0.049 0.951 16 O -0.580 6.580 17 H 0.274 0.726 18 H 0.064 0.936 19 H 0.052 0.948 20 H 0.031 0.969 21 H 0.086 0.914 22 H 0.064 0.936 23 H 0.044 0.956 24 H 0.080 0.920 25 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.656 -3.990 1.316 4.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.180 4.180 3 Si 0.791 3.209 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.184 1.184 7 C -0.549 4.549 8 H 0.084 0.916 9 C -0.016 4.016 10 C -0.337 4.337 11 C -0.094 4.094 12 C -0.139 4.139 13 C -0.139 4.139 14 C 0.081 3.919 15 H 0.067 0.933 16 O -0.387 6.387 17 H 0.085 0.915 18 H 0.082 0.918 19 H 0.071 0.929 20 H 0.049 0.951 21 H 0.104 0.896 22 H 0.083 0.917 23 H 0.063 0.937 24 H 0.098 0.902 25 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 2.010 -4.320 1.247 4.925 hybrid contribution 0.500 1.636 -0.040 1.711 sum 2.510 -2.684 1.206 3.867 Atomic orbital electron populations 1.69914 1.08997 1.28938 1.39278 1.26564 0.95248 1.03901 0.92279 0.85432 0.79141 0.77303 0.79068 1.19010 1.20211 1.18415 1.19366 0.97684 0.93135 1.44682 0.91557 1.18820 0.96156 0.93610 0.92982 1.22022 1.06800 0.96631 1.08234 1.20012 0.96985 0.93783 0.98665 1.21434 1.00334 0.97443 0.94665 1.21450 0.97494 0.97290 0.97621 1.20622 0.96688 0.93721 0.80874 0.93337 1.86284 1.64340 1.63221 1.24888 0.91541 0.91750 0.92915 0.95093 0.89569 0.91692 0.93712 0.90191 0.77011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -48.48 11.18 21.89 0.24 -48.23 15 2 C 0.03 1.70 4.94 85.37 0.42 2.12 15 3 Si 0.97 41.25 29.60 68.60 2.03 43.28 15 4 H -0.27 -10.82 7.11 99.48 0.71 -10.11 15 5 H -0.28 -11.53 7.11 99.48 0.71 -10.82 15 6 H -0.26 -10.74 7.11 99.48 0.71 -10.03 15 7 C -0.52 -28.52 7.91 23.22 0.18 -28.34 15 8 H 0.07 3.43 7.63 -2.91 -0.02 3.41 15 9 C -0.01 -0.76 5.28 -20.63 -0.11 -0.87 15 10 C -0.31 -17.06 8.51 24.48 0.21 -16.86 15 11 C -0.06 -2.50 6.10 29.61 0.18 -2.32 15 12 C -0.10 -3.64 5.97 30.65 0.18 -3.46 15 13 C -0.10 -3.99 5.63 30.70 0.17 -3.82 15 14 C 0.14 6.34 3.55 29.66 0.11 6.44 15 15 H 0.05 2.05 8.14 -2.39 -0.02 2.03 15 16 O -0.58 -26.51 13.16 -148.98 -1.96 -28.47 15 17 H 0.27 14.58 8.29 -92.71 -0.77 13.81 15 18 H 0.06 3.90 6.05 -2.91 -0.02 3.88 15 19 H 0.05 2.10 8.14 -2.38 -0.02 2.08 15 20 H 0.03 1.36 8.14 -2.39 -0.02 1.35 15 21 H 0.09 2.49 8.14 -2.39 -0.02 2.47 15 22 H 0.06 2.22 8.12 -2.38 -0.02 2.20 15 23 H 0.04 1.93 8.12 -2.39 -0.02 1.91 15 24 H 0.08 2.65 8.14 -2.39 -0.02 2.63 15 25 H 0.38 15.74 7.99 -74.06 -0.59 15.14 15 Total: -1.00 -62.81 210.07 2.25 -60.57 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: 0.58 Total: 19.95 kcal Atomic # 6 Polarization: -48.44 SS G_CDS: 1.35 Total: -47.10 kcal Atomic # 7 Polarization: -48.48 SS G_CDS: 0.24 Total: -48.23 kcal Atomic # 8 Polarization: -26.51 SS G_CDS: -1.96 Total: -28.47 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.03 Total: 43.28 kcal Total: -62.81 2.25 -60.57 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238714108.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.358 kcal (2) G-P(sol) polarization free energy of solvation -62.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds