Wall clock time and date at job start Mon Mar 30 2020 02:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.52142 * 110.66603 * 2 1 4 4 C 1.54383 * 102.89132 * 159.13916 * 3 2 1 5 5 H 1.09002 * 117.60676 * 116.44194 * 4 3 2 6 6 C 1.53003 * 118.12441 * 271.96225 * 4 3 2 7 7 C 1.53006 * 60.54487 * 93.22041 * 6 4 3 8 8 C 1.50698 * 119.52303 * 111.73566 * 7 6 4 9 9 H 1.08008 * 120.00193 * 289.30517 * 8 7 6 10 10 C 1.37874 * 119.99982 * 109.30885 * 8 7 6 11 11 N 1.31515 * 120.00295 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 120.00210 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.46906 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.47085 * 119.99476 * 12 10 8 15 15 H 1.48500 * 109.47325 * 239.99723 * 12 10 8 16 16 C 1.48565 * 110.99899 * 115.48789 * 2 1 3 17 17 H 1.08994 * 109.46901 * 304.51043 * 1 2 3 18 18 H 1.08990 * 109.46828 * 64.51301 * 1 2 3 19 19 H 1.08999 * 109.46387 * 184.51282 * 1 2 3 20 20 H 1.08997 * 110.22960 * 41.38615 * 3 2 1 21 21 H 1.09003 * 112.21772 * 277.81960 * 3 2 1 22 22 H 1.09003 * 117.44162 * 200.86270 * 6 4 3 23 23 H 1.08990 * 117.44580 * 345.57660 * 6 4 3 24 24 H 0.97000 * 120.00375 * 180.02562 * 11 10 8 25 25 H 1.08999 * 110.40820 * 82.18082 * 16 2 1 26 26 H 1.08997 * 110.51187 * 319.79033 * 16 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0060 1.4235 0.0000 4 6 3.4433 1.2495 0.5359 5 1 4.2659 1.5078 -0.1311 6 6 3.6586 1.2921 2.0501 7 6 3.4433 -0.0556 1.3584 8 6 4.5804 -1.0415 1.2828 9 1 5.4254 -0.8432 0.6398 10 6 4.5423 -2.1968 2.0343 11 7 3.5137 -2.4382 2.8175 12 14 5.9515 -3.4194 1.9400 13 1 6.9798 -2.9174 0.9936 14 1 6.5564 -3.5823 3.2865 15 1 5.4391 -4.7300 1.4657 16 6 2.0015 -0.5968 1.2520 17 1 -0.3633 0.5822 0.8468 18 1 -0.3632 0.4422 -0.9276 19 1 -0.3632 -1.0245 0.0809 20 1 1.4211 2.0470 0.6762 21 1 2.0230 1.8576 -0.9997 22 1 4.6630 1.5180 2.4085 23 1 2.8440 1.6782 2.6627 24 1 3.4871 -3.2508 3.3465 25 1 2.0079 -1.6846 1.1817 26 1 1.4105 -0.2756 2.1097 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000250664863.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:59 Heat of formation + Delta-G solvation = 37.466348 kcal Electronic energy + Delta-G solvation = -9685.550956 eV Core-core repulsion = 7958.212939 eV Total energy + Delta-G solvation = -1727.338016 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 167.101 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.51373 -33.54239 -32.14339 -27.43464 -26.25542 -25.04630 -21.37325 -19.70871 -18.76130 -16.32295 -14.89068 -14.19629 -14.01359 -13.38614 -13.07180 -12.27092 -11.95307 -11.42966 -11.04782 -10.96575 -10.82430 -10.48838 -10.32444 -10.17991 -9.47836 -8.75752 -8.62113 -8.18025 -7.49834 -6.06719 -4.07296 3.28982 3.36950 3.41605 4.39333 4.85107 4.97339 5.36816 5.62901 5.80182 5.94937 6.07797 6.13601 6.31280 6.46869 6.54358 6.68648 6.76175 6.86623 7.06884 7.27119 7.61541 7.72424 7.86811 7.99592 8.44310 8.90422 9.52780 11.02297 Molecular weight = 167.10amu Principal moments of inertia in cm(-1) A = 0.065398 B = 0.016527 C = 0.014826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.044952 B = 1693.768048 C = 1888.107413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.521 5.521 3 C 0.065 3.935 4 C -0.218 4.218 5 H 0.095 0.905 6 C -0.178 4.178 7 C 0.064 3.936 8 C -0.478 4.478 9 H 0.063 0.937 10 C 0.067 3.933 11 N -0.885 5.885 12 Si 0.898 3.102 13 H -0.272 1.272 14 H -0.283 1.283 15 H -0.282 1.282 16 C 0.087 3.913 17 H 0.017 0.983 18 H 0.057 0.943 19 H 0.062 0.938 20 H 0.031 0.969 21 H 0.071 0.929 22 H 0.084 0.916 23 H 0.061 0.939 24 H 0.261 0.739 25 H 0.099 0.901 26 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.935 3.641 -2.445 5.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.245 5.245 3 C -0.061 4.061 4 C -0.237 4.237 5 H 0.113 0.887 6 C -0.216 4.216 7 C 0.063 3.937 8 C -0.516 4.516 9 H 0.081 0.919 10 C -0.135 4.135 11 N -0.522 5.522 12 Si 0.725 3.275 13 H -0.196 1.196 14 H -0.210 1.210 15 H -0.208 1.208 16 C -0.039 4.039 17 H 0.036 0.964 18 H 0.076 0.924 19 H 0.081 0.919 20 H 0.050 0.950 21 H 0.089 0.911 22 H 0.102 0.898 23 H 0.080 0.920 24 H 0.071 0.929 25 H 0.118 0.882 26 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -2.869 3.167 -2.805 5.112 hybrid contribution 0.342 -0.096 0.778 0.855 sum -2.528 3.071 -2.027 4.464 Atomic orbital electron populations 1.22428 0.90364 1.01155 0.99487 1.66611 1.06063 1.13840 1.38009 1.23092 0.94168 0.89832 0.99042 1.23242 0.95833 1.11272 0.93324 0.88707 1.23107 1.00301 1.06479 0.91758 1.19960 0.93666 0.84786 0.95334 1.20418 1.03082 1.03090 1.25017 0.91904 1.24992 0.96057 0.97675 0.94787 1.69975 1.29382 1.26096 1.26762 0.86442 0.82216 0.80978 0.77841 1.19637 1.20955 1.20839 1.22502 0.93556 1.01212 0.86649 0.96440 0.92438 0.91887 0.95037 0.91086 0.89785 0.92043 0.92893 0.88241 0.96224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.55 60.07 0.57 0.84 15 2 N -0.52 -11.40 5.72 -234.94 -1.34 -12.74 15 3 C 0.07 1.32 6.55 -0.11 0.00 1.32 15 4 C -0.22 -4.92 6.92 -89.23 -0.62 -5.54 15 5 H 0.09 2.08 8.14 -51.93 -0.42 1.66 15 6 C -0.18 -4.15 9.85 -26.73 -0.26 -4.42 15 7 C 0.06 1.66 2.46 -154.28 -0.38 1.28 15 8 C -0.48 -13.47 9.29 -34.44 -0.32 -13.79 15 9 H 0.06 1.76 7.81 -52.48 -0.41 1.35 15 10 C 0.07 1.87 5.28 -17.82 -0.09 1.77 15 11 N -0.88 -25.17 11.54 55.43 0.64 -24.53 15 12 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 15 13 H -0.27 -6.35 7.11 56.52 0.40 -5.95 15 14 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 15 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 16 C 0.09 2.18 5.29 -2.18 -0.01 2.17 15 17 H 0.02 0.29 8.00 -51.93 -0.42 -0.12 15 18 H 0.06 0.88 8.14 -51.93 -0.42 0.46 15 19 H 0.06 1.08 8.14 -51.93 -0.42 0.65 15 20 H 0.03 0.60 7.96 -51.93 -0.41 0.19 15 21 H 0.07 1.28 8.14 -51.93 -0.42 0.85 15 22 H 0.08 1.91 8.14 -51.93 -0.42 1.49 15 23 H 0.06 1.36 8.14 -51.93 -0.42 0.94 15 24 H 0.26 7.03 8.31 -40.82 -0.34 6.69 15 25 H 0.10 2.74 6.80 -51.93 -0.35 2.38 15 26 H 0.02 0.49 7.97 -51.93 -0.41 0.08 15 LS Contribution 219.02 15.07 3.30 3.30 Total: -1.00 -28.69 219.02 -7.22 -35.90 By element: Atomic # 1 Polarization: 1.89 SS G_CDS: -3.68 Total: -1.79 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: -1.11 Total: -16.35 kcal Atomic # 7 Polarization: -36.56 SS G_CDS: -0.71 Total: -37.27 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 3.30 Total: 3.30 kcal Total: -28.69 -7.22 -35.90 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250664863.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.371 kcal (2) G-P(sol) polarization free energy of solvation -28.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds