Wall clock time and date at job start Mon Mar 30 2020 02:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.52142 * 110.66603 * 2 1 4 4 C 1.54383 * 102.89132 * 159.13916 * 3 2 1 5 5 H 1.09002 * 117.60676 * 116.44194 * 4 3 2 6 6 C 1.53003 * 118.12441 * 271.96225 * 4 3 2 7 7 C 1.53006 * 60.54487 * 93.22041 * 6 4 3 8 8 C 1.50698 * 119.52303 * 111.73566 * 7 6 4 9 9 H 1.08008 * 120.00193 * 289.30517 * 8 7 6 10 10 C 1.37874 * 119.99982 * 109.30885 * 8 7 6 11 11 N 1.31515 * 120.00295 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 120.00210 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.46906 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.47085 * 119.99476 * 12 10 8 15 15 H 1.48500 * 109.47325 * 239.99723 * 12 10 8 16 16 C 1.48565 * 110.99899 * 115.48789 * 2 1 3 17 17 H 1.08994 * 109.46901 * 304.51043 * 1 2 3 18 18 H 1.08990 * 109.46828 * 64.51301 * 1 2 3 19 19 H 1.08999 * 109.46387 * 184.51282 * 1 2 3 20 20 H 1.08997 * 110.22960 * 41.38615 * 3 2 1 21 21 H 1.09003 * 112.21772 * 277.81960 * 3 2 1 22 22 H 1.09003 * 117.44162 * 200.86270 * 6 4 3 23 23 H 1.08990 * 117.44580 * 345.57660 * 6 4 3 24 24 H 0.97000 * 120.00375 * 180.02562 * 11 10 8 25 25 H 1.08999 * 110.40820 * 82.18082 * 16 2 1 26 26 H 1.08997 * 110.51187 * 319.79033 * 16 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0060 1.4235 0.0000 4 6 3.4433 1.2495 0.5359 5 1 4.2659 1.5078 -0.1311 6 6 3.6586 1.2921 2.0501 7 6 3.4433 -0.0556 1.3584 8 6 4.5804 -1.0415 1.2828 9 1 5.4254 -0.8432 0.6398 10 6 4.5423 -2.1968 2.0343 11 7 3.5137 -2.4382 2.8175 12 14 5.9515 -3.4194 1.9400 13 1 6.9798 -2.9174 0.9936 14 1 6.5564 -3.5823 3.2865 15 1 5.4391 -4.7300 1.4657 16 6 2.0015 -0.5968 1.2520 17 1 -0.3633 0.5822 0.8468 18 1 -0.3632 0.4422 -0.9276 19 1 -0.3632 -1.0245 0.0809 20 1 1.4211 2.0470 0.6762 21 1 2.0230 1.8576 -0.9997 22 1 4.6630 1.5180 2.4085 23 1 2.8440 1.6782 2.6627 24 1 3.4871 -3.2508 3.3465 25 1 2.0079 -1.6846 1.1817 26 1 1.4105 -0.2756 2.1097 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250664863.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:59 Heat of formation + Delta-G solvation = 18.470482 kcal Electronic energy + Delta-G solvation = -9686.374678 eV Core-core repulsion = 7958.212939 eV Total energy + Delta-G solvation = -1728.161739 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 167.101 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.30641 -35.32848 -34.14348 -29.26165 -27.86768 -27.07902 -23.08249 -21.52342 -20.65355 -18.31890 -16.85666 -15.98498 -15.71585 -15.00310 -14.81158 -14.11412 -13.61130 -13.23561 -12.90456 -12.85127 -12.68467 -12.27719 -12.09304 -11.89268 -11.39815 -10.76280 -10.55314 -10.08242 -9.21789 -8.14698 -6.22079 1.41905 1.43674 1.55615 2.42079 2.97300 3.26370 3.38850 3.92930 4.17696 4.45326 4.48689 4.55763 4.71337 4.75626 4.83187 4.95978 4.98831 5.02974 5.23758 5.49049 5.63974 5.83869 5.92131 6.29406 6.38125 6.80147 7.40562 8.93965 Molecular weight = 167.10amu Principal moments of inertia in cm(-1) A = 0.065398 B = 0.016527 C = 0.014826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.044952 B = 1693.768048 C = 1888.107413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.538 5.538 3 C 0.070 3.930 4 C -0.200 4.200 5 H 0.100 0.900 6 C -0.172 4.172 7 C 0.014 3.986 8 C -0.503 4.503 9 H 0.053 0.947 10 C 0.021 3.979 11 N -0.912 5.912 12 Si 0.962 3.038 13 H -0.268 1.268 14 H -0.277 1.277 15 H -0.278 1.278 16 C 0.103 3.897 17 H 0.025 0.975 18 H 0.087 0.913 19 H 0.062 0.938 20 H 0.046 0.954 21 H 0.100 0.900 22 H 0.083 0.917 23 H 0.071 0.929 24 H 0.263 0.737 25 H 0.064 0.936 26 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.114 4.328 -3.174 6.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.262 5.262 3 C -0.056 4.056 4 C -0.219 4.219 5 H 0.118 0.882 6 C -0.210 4.210 7 C 0.013 3.987 8 C -0.541 4.541 9 H 0.071 0.929 10 C -0.179 4.179 11 N -0.549 5.549 12 Si 0.787 3.213 13 H -0.193 1.193 14 H -0.203 1.203 15 H -0.204 1.204 16 C -0.025 4.025 17 H 0.043 0.957 18 H 0.106 0.894 19 H 0.081 0.919 20 H 0.065 0.935 21 H 0.118 0.882 22 H 0.102 0.898 23 H 0.090 0.910 24 H 0.072 0.928 25 H 0.083 0.917 26 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges -3.056 3.870 -3.543 6.072 hybrid contribution 0.368 -0.267 0.978 1.078 sum -2.687 3.602 -2.565 5.175 Atomic orbital electron populations 1.22514 0.87786 1.01749 1.01358 1.66517 1.08676 1.14942 1.36094 1.23185 0.92372 0.89132 1.00908 1.23391 0.97727 1.07922 0.92884 0.88225 1.23074 1.00669 1.04396 0.92863 1.20114 0.93699 0.85936 0.98936 1.20688 1.03715 1.04432 1.25230 0.92860 1.25740 0.98419 0.99319 0.94408 1.70085 1.30896 1.26616 1.27353 0.85449 0.79268 0.78597 0.77986 1.19254 1.20300 1.20405 1.22128 0.93355 0.99268 0.87718 0.95660 0.89445 0.91925 0.93541 0.88196 0.89840 0.91047 0.92797 0.91743 0.97250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.48 9.55 127.69 1.22 1.70 15 2 N -0.54 -22.60 5.72 -897.20 -5.14 -27.74 15 3 C 0.07 2.62 6.55 85.73 0.56 3.18 15 4 C -0.20 -8.71 6.92 -9.90 -0.07 -8.78 15 5 H 0.10 4.19 8.14 -2.39 -0.02 4.17 15 6 C -0.17 -7.85 9.85 30.60 0.30 -7.55 15 7 C 0.01 0.75 2.46 -52.03 -0.13 0.62 15 8 C -0.50 -28.63 9.29 25.60 0.24 -28.39 15 9 H 0.05 3.02 7.81 -2.91 -0.02 3.00 15 10 C 0.02 1.17 5.28 84.65 0.45 1.62 15 11 N -0.91 -52.67 11.54 21.45 0.25 -52.43 15 12 Si 0.96 43.85 29.54 68.60 2.03 45.88 15 13 H -0.27 -11.93 7.11 99.48 0.71 -11.23 15 14 H -0.28 -12.28 7.11 99.48 0.71 -11.57 15 15 H -0.28 -12.41 7.11 99.48 0.71 -11.70 15 16 C 0.10 5.15 5.29 86.45 0.46 5.60 15 17 H 0.02 0.79 8.00 -2.39 -0.02 0.77 15 18 H 0.09 2.36 8.14 -2.39 -0.02 2.34 15 19 H 0.06 2.05 8.14 -2.39 -0.02 2.03 15 20 H 0.05 1.61 7.96 -2.39 -0.02 1.59 15 21 H 0.10 3.17 8.14 -2.39 -0.02 3.15 15 22 H 0.08 3.75 8.14 -2.39 -0.02 3.73 15 23 H 0.07 3.07 8.14 -2.39 -0.02 3.05 15 24 H 0.26 14.33 8.31 -92.71 -0.77 13.56 15 25 H 0.06 3.64 6.80 -2.39 -0.02 3.62 15 26 H 0.01 0.47 7.97 -2.39 -0.02 0.45 15 Total: -1.00 -60.62 219.02 1.30 -59.31 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: 1.14 Total: 6.96 kcal Atomic # 6 Polarization: -35.02 SS G_CDS: 3.03 Total: -31.99 kcal Atomic # 7 Polarization: -75.28 SS G_CDS: -4.89 Total: -80.16 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -60.62 1.30 -59.31 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250664863.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.784 kcal (2) G-P(sol) polarization free energy of solvation -60.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds