Wall clock time and date at job start Mon Mar 30 2020 01:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30834 * 125.95694 * 2 1 4 4 C 1.33241 * 109.82716 * 180.02562 * 3 2 1 5 5 C 1.50701 * 125.52704 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.47179 * 89.99957 * 5 4 3 7 7 H 1.08008 * 120.00071 * 0.02562 * 6 5 4 8 8 C 1.37871 * 120.00469 * 179.97438 * 6 5 4 9 9 N 1.31522 * 119.99514 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00631 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46908 * 60.00504 * 10 8 6 12 12 H 1.48496 * 109.47572 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47061 * 300.00953 * 10 8 6 14 14 N 1.30718 * 108.94820 * 359.97438 * 4 3 2 15 15 N 1.34428 * 125.96273 * 180.02562 * 2 1 3 16 16 H 0.96998 * 126.82131 * 359.97438 * 15 2 1 17 17 H 1.09003 * 109.47179 * 89.97785 * 1 2 3 18 18 H 1.09004 * 109.47263 * 209.97548 * 1 2 3 19 19 H 1.09001 * 109.47979 * 329.97713 * 1 2 3 20 20 H 1.08999 * 109.46976 * 209.99632 * 5 4 3 21 21 H 1.08988 * 109.47287 * 330.00039 * 5 4 3 22 22 H 0.97004 * 119.99560 * 179.97438 * 9 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2752 1.0590 0.0000 4 6 3.5551 0.6889 -0.0006 5 6 4.7371 1.6238 -0.0013 6 6 5.1318 1.9357 1.4193 7 1 4.5820 1.5001 2.2406 8 6 6.1953 2.7762 1.6707 9 7 6.8652 3.3062 0.6706 10 14 6.6841 3.1634 3.4315 11 1 7.0477 1.9056 4.1322 12 1 7.8489 4.0845 3.4308 13 1 5.5441 3.8081 4.1313 14 7 3.6194 -0.6167 -0.0004 15 7 2.2964 -1.0881 -0.0005 16 1 2.0093 -2.0146 -0.0006 17 1 -0.3634 0.0004 -1.0277 18 1 -0.3634 -0.8902 0.5135 19 1 -0.3635 0.8897 0.5142 20 1 5.5739 1.1510 -0.5154 21 1 4.4697 2.5470 -0.5151 22 1 7.6132 3.8979 0.8474 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259271024.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:40 Heat of formation + Delta-G solvation = 69.843242 kcal Electronic energy + Delta-G solvation = -8972.645034 eV Core-core repulsion = 7143.170641 eV Total energy + Delta-G solvation = -1829.474392 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 167.075 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -41.33507 -33.67715 -32.14540 -31.67703 -28.77719 -27.07442 -23.52016 -20.70143 -19.46379 -17.18430 -16.33990 -14.93581 -14.55128 -13.86286 -12.97039 -12.78650 -12.36582 -11.95728 -11.37503 -11.14296 -10.77263 -10.61437 -9.95326 -9.65084 -9.22940 -9.16068 -8.54134 -8.37251 -6.00419 -4.02360 2.27564 3.28239 3.37945 3.40480 3.44055 3.78412 4.49944 4.63097 5.15308 5.35882 5.50066 5.62981 5.91599 5.94127 7.07355 7.29621 7.46528 7.58437 7.73408 7.94845 8.30968 8.96897 8.98059 9.59453 11.10705 Molecular weight = 167.08amu Principal moments of inertia in cm(-1) A = 0.084311 B = 0.011797 C = 0.011397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 332.023188 B = 2372.940908 C = 2456.216968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.257 3.743 3 N -0.537 5.537 4 C 0.272 3.728 5 C 0.101 3.899 6 C -0.506 4.506 7 H 0.054 0.946 8 C 0.060 3.940 9 N -0.894 5.894 10 Si 0.901 3.099 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.276 1.276 14 N -0.333 5.333 15 N -0.503 5.503 16 H 0.429 0.571 17 H 0.084 0.916 18 H 0.075 0.925 19 H 0.093 0.907 20 H 0.044 0.956 21 H 0.049 0.951 22 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.410 -6.408 -0.760 12.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.022 4.022 3 N -0.267 5.267 4 C -0.009 4.009 5 C 0.062 3.938 6 C -0.546 4.546 7 H 0.073 0.927 8 C -0.142 4.142 9 N -0.533 5.533 10 Si 0.729 3.271 11 H -0.203 1.203 12 H -0.211 1.211 13 H -0.202 1.202 14 N -0.161 5.161 15 N -0.221 5.221 16 H 0.272 0.728 17 H 0.103 0.897 18 H 0.094 0.906 19 H 0.112 0.888 20 H 0.062 0.938 21 H 0.067 0.933 22 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.661 -6.289 -0.811 11.556 hybrid contribution -0.083 -0.480 0.978 1.093 sum -9.743 -6.769 0.167 11.865 Atomic orbital electron populations 1.20251 0.84688 1.04257 1.03734 1.24346 0.96271 0.83757 0.97860 1.70439 1.02465 1.28990 1.24764 1.25430 0.93624 0.89944 0.91894 1.17811 0.85904 0.91265 0.98834 1.20828 1.14451 1.28395 0.90918 0.92741 1.24943 0.96030 0.95674 0.97527 1.69944 1.20779 1.31846 1.30729 0.86507 0.77940 0.78186 0.84502 1.20251 1.21127 1.20151 1.78092 0.95022 1.13579 1.29435 1.48015 1.05267 1.09131 1.59651 0.72797 0.89731 0.90642 0.88818 0.93829 0.93315 0.92682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.74 10.51 36.00 0.38 -0.36 14 2 C 0.26 4.47 8.24 -155.70 -1.28 3.19 14 3 N -0.54 -12.27 11.19 -8.16 -0.09 -12.37 14 4 C 0.27 6.86 7.33 -156.85 -1.15 5.71 14 5 C 0.10 2.84 5.60 -29.03 -0.16 2.68 14 6 C -0.51 -15.07 9.09 -34.44 -0.31 -15.39 14 7 H 0.05 1.63 7.74 -52.48 -0.41 1.23 14 8 C 0.06 1.75 5.46 -17.82 -0.10 1.66 14 9 N -0.89 -26.98 13.29 55.43 0.74 -26.25 14 10 Si 0.90 22.27 29.54 -169.99 -5.02 17.24 14 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 14 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 14 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 14 14 N -0.33 -7.72 12.80 32.42 0.41 -7.30 14 15 N -0.50 -8.70 7.45 32.62 0.24 -8.46 14 16 H 0.43 5.29 8.96 -182.33 -1.63 3.66 14 17 H 0.08 0.74 8.14 -51.93 -0.42 0.32 14 18 H 0.07 0.57 8.14 -51.93 -0.42 0.15 14 19 H 0.09 0.99 8.14 -51.93 -0.42 0.57 14 20 H 0.04 1.26 8.14 -51.93 -0.42 0.83 14 21 H 0.05 1.41 8.14 -51.94 -0.42 0.99 14 22 H 0.26 7.47 8.31 -40.82 -0.34 7.14 14 LS Contribution 207.53 15.07 3.13 3.13 Total: -1.00 -34.29 207.53 -6.51 -40.80 By element: Atomic # 1 Polarization: -0.99 SS G_CDS: -3.29 Total: -4.28 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: -2.63 Total: -2.51 kcal Atomic # 7 Polarization: -55.68 SS G_CDS: 1.30 Total: -54.38 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 3.13 Total: 3.13 kcal Total: -34.29 -6.51 -40.80 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259271024.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.640 kcal (2) G-P(sol) polarization free energy of solvation -34.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds