Wall clock time and date at job start Mon Mar 30 2020 01:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30834 * 125.95694 * 2 1 4 4 C 1.33241 * 109.82716 * 180.02562 * 3 2 1 5 5 C 1.50701 * 125.52704 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.47179 * 89.99957 * 5 4 3 7 7 H 1.08008 * 120.00071 * 0.02562 * 6 5 4 8 8 C 1.37871 * 120.00469 * 179.97438 * 6 5 4 9 9 N 1.31522 * 119.99514 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00631 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46908 * 60.00504 * 10 8 6 12 12 H 1.48496 * 109.47572 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47061 * 300.00953 * 10 8 6 14 14 N 1.30718 * 108.94820 * 359.97438 * 4 3 2 15 15 N 1.34428 * 125.96273 * 180.02562 * 2 1 3 16 16 H 0.96998 * 126.82131 * 359.97438 * 15 2 1 17 17 H 1.09003 * 109.47179 * 89.97785 * 1 2 3 18 18 H 1.09004 * 109.47263 * 209.97548 * 1 2 3 19 19 H 1.09001 * 109.47979 * 329.97713 * 1 2 3 20 20 H 1.08999 * 109.46976 * 209.99632 * 5 4 3 21 21 H 1.08988 * 109.47287 * 330.00039 * 5 4 3 22 22 H 0.97004 * 119.99560 * 179.97438 * 9 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2752 1.0590 0.0000 4 6 3.5551 0.6889 -0.0006 5 6 4.7371 1.6238 -0.0013 6 6 5.1318 1.9357 1.4193 7 1 4.5820 1.5001 2.2406 8 6 6.1953 2.7762 1.6707 9 7 6.8652 3.3062 0.6706 10 14 6.6841 3.1634 3.4315 11 1 7.0477 1.9056 4.1322 12 1 7.8489 4.0845 3.4308 13 1 5.5441 3.8081 4.1313 14 7 3.6194 -0.6167 -0.0004 15 7 2.2964 -1.0881 -0.0005 16 1 2.0093 -2.0146 -0.0006 17 1 -0.3634 0.0004 -1.0277 18 1 -0.3634 -0.8902 0.5135 19 1 -0.3635 0.8897 0.5142 20 1 5.5739 1.1510 -0.5154 21 1 4.4697 2.5470 -0.5151 22 1 7.6132 3.8979 0.8474 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259271024.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:40 Heat of formation + Delta-G solvation = 44.935706 kcal Electronic energy + Delta-G solvation = -8973.725106 eV Core-core repulsion = 7143.170641 eV Total energy + Delta-G solvation = -1830.554464 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 167.075 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -42.95037 -35.71081 -33.92787 -33.20906 -30.64108 -28.56351 -25.68345 -22.20343 -21.23779 -18.74522 -18.56195 -16.62332 -16.47096 -15.32068 -14.54479 -14.35203 -13.66782 -13.54737 -13.42689 -12.79050 -12.64975 -12.53597 -11.98183 -11.75288 -10.93093 -10.87474 -10.61686 -10.26585 -8.24150 -6.36408 0.74487 1.39969 1.44470 1.52577 1.91937 2.03236 2.43364 3.07930 3.31474 3.86997 4.17115 4.73014 4.75755 5.08803 5.17420 5.27391 5.48594 5.56704 5.66434 6.07394 6.41452 6.68723 7.30358 7.31984 8.87434 Molecular weight = 167.08amu Principal moments of inertia in cm(-1) A = 0.084311 B = 0.011797 C = 0.011397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 332.023188 B = 2372.940908 C = 2456.216968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.277 3.723 3 N -0.582 5.582 4 C 0.249 3.751 5 C 0.110 3.890 6 C -0.531 4.531 7 H 0.046 0.954 8 C 0.009 3.991 9 N -0.925 5.925 10 Si 0.975 3.025 11 H -0.270 1.270 12 H -0.273 1.273 13 H -0.268 1.268 14 N -0.360 5.360 15 N -0.483 5.483 16 H 0.453 0.547 17 H 0.112 0.888 18 H 0.116 0.884 19 H 0.096 0.904 20 H 0.020 0.980 21 H 0.025 0.975 22 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.014 -7.248 0.312 14.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.001 4.001 3 N -0.313 5.313 4 C -0.033 4.033 5 C 0.070 3.930 6 C -0.570 4.570 7 H 0.064 0.936 8 C -0.190 4.190 9 N -0.564 5.564 10 Si 0.798 3.202 11 H -0.195 1.195 12 H -0.197 1.197 13 H -0.193 1.193 14 N -0.189 5.189 15 N -0.203 5.203 16 H 0.301 0.699 17 H 0.130 0.870 18 H 0.135 0.865 19 H 0.115 0.885 20 H 0.039 0.961 21 H 0.043 0.957 22 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.295 -7.174 0.249 13.383 hybrid contribution 0.304 -0.303 0.579 0.721 sum -10.990 -7.476 0.828 13.318 Atomic orbital electron populations 1.20627 0.79321 1.06444 1.06155 1.25496 0.98538 0.82088 0.94021 1.70343 1.01917 1.31794 1.27242 1.24774 0.93959 0.90307 0.94271 1.17416 0.86789 0.90926 0.97820 1.21036 1.15247 1.29309 0.91361 0.93612 1.25901 0.95588 0.95012 1.02475 1.70058 1.21108 1.32056 1.33171 0.85369 0.78017 0.78341 0.78488 1.19479 1.19750 1.19295 1.77904 0.98497 1.12702 1.29838 1.47823 1.03326 1.10655 1.58517 0.69862 0.86952 0.86528 0.88509 0.96141 0.95691 0.92137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.12 10.51 71.23 0.75 -0.37 14 2 C 0.28 8.99 8.24 138.22 1.14 10.13 14 3 N -0.58 -26.56 11.19 -179.73 -2.01 -28.58 14 4 C 0.25 12.85 7.33 138.63 1.02 13.87 14 5 C 0.11 6.48 5.60 29.10 0.16 6.65 14 6 C -0.53 -32.49 9.09 25.60 0.23 -32.26 14 7 H 0.05 2.81 7.74 -2.91 -0.02 2.78 14 8 C 0.01 0.55 5.46 84.65 0.46 1.01 14 9 N -0.92 -56.88 13.29 21.45 0.28 -56.60 14 10 Si 0.97 45.74 29.54 68.60 2.03 47.76 14 11 H -0.27 -12.29 7.11 99.48 0.71 -11.58 14 12 H -0.27 -12.14 7.11 99.48 0.71 -11.43 14 13 H -0.27 -12.17 7.11 99.48 0.71 -11.47 14 14 N -0.36 -16.70 12.80 -51.33 -0.66 -17.36 14 15 N -0.48 -15.71 7.45 -50.71 -0.38 -16.08 14 16 H 0.45 9.74 8.96 -213.10 -1.91 7.83 14 17 H 0.11 1.40 8.14 -2.39 -0.02 1.38 14 18 H 0.12 1.08 8.14 -2.39 -0.02 1.06 14 19 H 0.10 1.68 8.14 -2.39 -0.02 1.66 14 20 H 0.02 1.25 8.14 -2.39 -0.02 1.23 14 21 H 0.02 1.54 8.14 -2.39 -0.02 1.52 14 22 H 0.27 15.40 8.31 -92.71 -0.77 14.63 14 Total: -1.00 -76.57 207.53 2.35 -74.22 By element: Atomic # 1 Polarization: -1.71 SS G_CDS: -0.68 Total: -2.39 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: 3.76 Total: -0.97 kcal Atomic # 7 Polarization: -115.86 SS G_CDS: -2.76 Total: -118.62 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.76 kcal Total: -76.57 2.35 -74.22 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259271024.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.155 kcal (2) G-P(sol) polarization free energy of solvation -76.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds