Wall clock time and date at job start Mon Mar 30 2020 02:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86794 * 119.99670 * 2 1 4 4 H 1.48500 * 109.47190 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47176 * 299.99919 * 3 2 1 6 6 H 1.48499 * 109.47442 * 59.99971 * 3 2 1 7 7 C 1.37877 * 119.99813 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99311 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00349 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47392 * 180.02562 * 9 7 2 11 11 C 1.50693 * 109.47394 * 180.02562 * 10 9 7 12 12 N 1.34497 * 126.28727 * 270.02306 * 11 10 9 13 13 C 1.31126 * 105.61473 * 180.02562 * 12 11 10 14 14 O 1.33644 * 106.89983 * 359.97438 * 13 12 11 15 15 N 1.21297 * 109.80913 * 0.02562 * 14 13 12 16 16 H 0.96995 * 120.00031 * 0.02562 * 1 2 3 17 17 H 1.09005 * 109.47002 * 59.99937 * 9 7 2 18 18 H 1.08999 * 109.47529 * 300.00129 * 9 7 2 19 19 H 1.08992 * 109.46888 * 59.99794 * 10 9 7 20 20 H 1.09007 * 109.46638 * 300.00213 * 10 9 7 21 21 H 1.08005 * 126.55289 * 180.26876 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6621 0.0027 11 6 1.4919 -4.9671 0.0033 12 7 1.0932 -5.6556 1.0877 13 6 0.4806 -6.7188 0.6252 14 8 0.5253 -6.6436 -0.7084 15 7 1.1082 -5.6342 -1.0439 16 1 -0.4850 0.8400 -0.0004 17 1 0.6241 -2.5575 -0.8880 18 1 0.6248 -2.5564 0.8919 19 1 2.8720 -3.6035 0.8926 20 1 2.8720 -3.6050 -0.8874 21 1 0.0228 -7.5028 1.2102 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259465596.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:18 Heat of formation + Delta-G solvation = 29.362126 kcal Electronic energy + Delta-G solvation = -9051.017421 eV Core-core repulsion = 7122.068973 eV Total energy + Delta-G solvation = -1928.948447 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 168.064 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -46.55015 -37.36842 -35.61101 -33.92341 -32.18458 -27.87823 -25.11190 -24.30832 -22.40456 -19.13216 -18.82260 -18.35315 -16.71973 -16.53643 -15.16692 -14.82306 -14.30280 -13.58648 -13.38208 -12.88970 -12.77598 -12.41290 -12.17077 -11.88514 -11.83091 -11.36319 -10.82028 -10.62331 -8.25026 -6.38037 0.38973 1.33644 1.41092 1.41557 1.55592 2.32351 2.39503 2.96367 3.08946 3.29064 4.28070 4.47775 4.58367 4.79742 4.94158 5.20117 5.37073 5.51039 5.72833 6.10910 6.77232 7.32065 7.35099 8.87979 Molecular weight = 168.06amu Principal moments of inertia in cm(-1) A = 0.124680 B = 0.010037 C = 0.009855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 224.521357 B = 2789.023069 C = 2840.421701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.975 3.025 4 H -0.257 1.257 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.544 4.544 8 H 0.071 0.929 9 C 0.040 3.960 10 C -0.018 4.018 11 C 0.164 3.836 12 N -0.522 5.522 13 C 0.177 3.823 14 O 0.077 5.923 15 N -0.414 5.414 16 H 0.265 0.735 17 H -0.014 1.014 18 H -0.008 1.008 19 H 0.091 0.909 20 H 0.084 0.916 21 H 0.325 0.675 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.784 -11.245 1.520 11.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.798 3.202 4 H -0.181 1.181 5 H -0.204 1.204 6 H -0.202 1.202 7 C -0.582 4.582 8 H 0.089 0.911 9 C 0.002 3.998 10 C -0.057 4.057 11 C -0.108 4.108 12 N -0.255 5.255 13 C -0.062 4.062 14 O 0.018 5.982 15 N -0.122 5.122 16 H 0.074 0.926 17 H 0.004 0.996 18 H 0.010 0.990 19 H 0.110 0.890 20 H 0.102 0.898 21 H 0.340 0.660 Dipole moment (debyes) X Y Z Total from point charges 1.971 -10.600 1.015 10.829 hybrid contribution -0.157 0.703 0.114 0.730 sum 1.814 -9.897 1.130 10.125 Atomic orbital electron populations 1.70128 1.08098 1.27996 1.51293 1.26075 0.95808 1.03774 0.94321 0.85256 0.79137 0.77997 0.77791 1.18083 1.20368 1.20243 1.21627 0.93925 0.91454 1.51157 0.91070 1.18855 0.93867 0.92361 0.94730 1.20009 0.96874 0.85192 1.03622 1.26260 1.00640 1.00348 0.83528 1.71848 1.16561 1.06680 1.30395 1.31758 0.94746 0.98118 0.81580 1.85217 1.54251 1.32051 1.26675 1.74627 1.14413 0.98489 1.24662 0.92609 0.99583 0.98996 0.89027 0.89782 0.66040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.20 13.29 21.45 0.28 -57.91 14 2 C 0.00 -0.11 5.46 84.65 0.46 0.35 14 3 Si 0.97 44.54 29.54 68.60 2.03 46.57 14 4 H -0.26 -11.06 7.11 99.48 0.71 -10.35 14 5 H -0.28 -12.39 7.11 99.48 0.71 -11.69 14 6 H -0.28 -12.30 7.11 99.48 0.71 -11.59 14 7 C -0.54 -31.47 9.11 25.60 0.23 -31.24 14 8 H 0.07 3.86 7.74 -2.91 -0.02 3.84 14 9 C 0.04 2.24 4.95 29.85 0.15 2.39 14 10 C -0.02 -0.81 5.78 29.85 0.17 -0.64 14 11 C 0.16 6.68 7.47 138.46 1.03 7.72 14 12 N -0.52 -18.16 11.55 -315.38 -3.64 -21.80 14 13 C 0.18 3.99 13.40 130.52 1.75 5.74 14 14 O 0.08 2.23 11.31 74.83 0.85 3.07 14 15 N -0.41 -15.92 12.16 -60.40 -0.73 -16.65 14 16 H 0.27 15.36 8.31 -92.71 -0.77 14.59 14 17 H -0.01 -0.87 8.14 -2.38 -0.02 -0.89 14 18 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 14 19 H 0.09 3.85 8.14 -2.39 -0.02 3.83 14 20 H 0.08 3.58 8.14 -2.38 -0.02 3.56 14 21 H 0.33 1.93 8.06 -2.91 -0.02 1.91 14 Total: -1.00 -73.54 202.01 3.81 -69.73 By element: Atomic # 1 Polarization: -8.55 SS G_CDS: 1.23 Total: -7.32 kcal Atomic # 6 Polarization: -19.48 SS G_CDS: 3.80 Total: -15.68 kcal Atomic # 7 Polarization: -92.28 SS G_CDS: -4.09 Total: -96.37 kcal Atomic # 8 Polarization: 2.23 SS G_CDS: 0.85 Total: 3.07 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -73.54 3.81 -69.73 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259465596.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.094 kcal (2) G-P(sol) polarization free energy of solvation -73.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds