Wall clock time and date at job start Mon Mar 30 2020 01:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.31380 * 127.05046 * 2 1 4 4 N 1.28603 * 108.71940 * 180.26937 * 3 2 1 5 5 H 0.96993 * 124.62087 * 179.71460 * 4 3 2 6 6 N 1.28600 * 110.75809 * 359.71511 * 4 3 2 7 7 C 1.31383 * 108.71974 * 0.02562 * 6 4 3 8 8 C 1.50700 * 127.04934 * 179.97438 * 7 6 4 9 9 C 1.50706 * 109.47062 * 90.02212 * 8 7 6 10 10 H 1.07998 * 119.99503 * 0.02562 * 9 8 7 11 11 C 1.37871 * 120.00434 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99826 * 359.72891 * 11 9 8 13 13 Si 1.86800 * 120.00406 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.46758 * 269.72576 * 13 11 9 15 15 H 1.48499 * 109.47026 * 29.72423 * 13 11 9 16 16 H 1.48496 * 109.47474 * 149.72459 * 13 11 9 17 17 H 1.08996 * 109.46837 * 270.19257 * 1 2 3 18 18 H 1.09003 * 109.46673 * 30.19067 * 1 2 3 19 19 H 1.08998 * 109.47223 * 150.19047 * 1 2 3 20 20 H 1.09004 * 109.47406 * 330.02918 * 8 7 6 21 21 H 1.08993 * 109.47274 * 210.02545 * 8 7 6 22 22 H 0.97000 * 120.00236 * 0.27947 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2987 1.0486 0.0000 4 7 3.5194 0.6441 -0.0057 5 1 4.2935 1.2285 -0.0110 6 7 3.5739 -0.6407 -0.0036 7 6 2.3486 -1.1147 0.0033 8 6 1.9357 -2.5641 0.0074 9 6 1.8047 -3.0450 1.4297 10 1 2.0004 -2.3685 2.2485 11 6 1.4339 -4.3480 1.6855 12 7 1.1894 -5.1699 0.6883 13 14 1.2709 -4.9439 3.4484 14 1 2.5723 -5.4919 3.9080 15 1 0.8763 -3.8083 4.3202 16 1 0.2344 -6.0050 3.5184 17 1 -0.3633 0.0035 1.0276 18 1 -0.3633 0.8883 -0.5168 19 1 -0.3633 -0.8917 -0.5109 20 1 2.6897 -3.1582 -0.5089 21 1 0.9779 -2.6705 -0.5018 22 1 1.2739 -4.8605 -0.2271 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259469855.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:08 Heat of formation + Delta-G solvation = 80.313055 kcal Electronic energy + Delta-G solvation = -9162.518643 eV Core-core repulsion = 7333.498255 eV Total energy + Delta-G solvation = -1829.020387 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 167.075 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -42.87286 -34.18432 -32.72274 -31.77804 -28.04892 -27.33512 -23.41536 -20.74052 -20.26275 -17.83719 -16.78157 -15.61750 -13.80669 -13.42989 -13.34600 -12.73747 -12.54827 -12.11515 -11.56260 -10.93694 -10.59846 -10.16343 -10.12682 -10.02740 -9.57160 -8.98575 -8.36632 -8.15664 -6.38520 -4.08739 2.43147 3.19607 3.38357 3.45804 3.48306 3.64505 4.54967 4.90236 5.36908 5.48869 5.97937 6.07866 6.11624 6.43171 6.69850 6.93783 7.20208 7.36385 7.65657 8.09056 8.42590 8.83318 8.96323 9.60535 11.01410 Molecular weight = 167.08amu Principal moments of inertia in cm(-1) A = 0.068002 B = 0.013751 C = 0.013363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.653700 B = 2035.692434 C = 2094.867379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C -0.002 4.002 3 N -0.305 5.305 4 N -0.273 5.273 5 H 0.459 0.541 6 N -0.303 5.303 7 C 0.065 3.935 8 C 0.084 3.916 9 C -0.589 4.589 10 H 0.049 0.951 11 C 0.019 3.981 12 N -0.911 5.911 13 Si 1.074 2.926 14 H -0.288 1.288 15 H -0.289 1.289 16 H -0.283 1.283 17 H 0.075 0.925 18 H 0.063 0.937 19 H 0.080 0.920 20 H 0.027 0.973 21 H 0.034 0.966 22 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.101 8.242 -0.703 8.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.166 4.166 3 N -0.149 5.149 4 N -0.103 5.103 5 H 0.309 0.691 6 N -0.145 5.145 7 C -0.100 4.100 8 C 0.045 3.955 9 C -0.628 4.628 10 H 0.067 0.933 11 C -0.185 4.185 12 N -0.547 5.547 13 Si 0.902 3.098 14 H -0.214 1.214 15 H -0.215 1.215 16 H -0.209 1.209 17 H 0.094 0.906 18 H 0.082 0.918 19 H 0.099 0.901 20 H 0.046 0.954 21 H 0.052 0.948 22 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.740 7.695 0.212 7.733 hybrid contribution 0.333 1.267 -0.866 1.570 sum 1.073 8.962 -0.654 9.050 Atomic orbital electron populations 1.19953 0.85915 1.02544 1.02965 1.23056 0.98264 0.88749 1.06525 1.73778 0.91889 1.28276 1.21002 1.45551 1.06019 1.03929 1.54766 0.69136 1.74064 1.25464 0.93597 1.21390 1.23789 0.86923 0.99779 0.99470 1.17828 0.96203 0.82555 0.98960 1.21822 1.51305 0.98828 0.90815 0.93300 1.25833 0.93597 0.93037 1.05996 1.70763 1.45693 1.37931 1.00305 0.83471 0.76899 0.75613 0.73836 1.21449 1.21484 1.20867 0.90646 0.91789 0.90117 0.95438 0.94827 0.92000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.93 10.34 36.01 0.37 -0.55 14 2 C 0.00 -0.04 7.35 -82.25 -0.60 -0.65 14 3 N -0.31 -5.91 12.31 33.72 0.42 -5.49 14 4 N -0.27 -4.98 7.79 60.35 0.47 -4.51 14 5 H 0.46 6.06 8.96 -339.91 -3.05 3.02 14 6 N -0.30 -6.72 12.31 33.71 0.42 -6.30 14 7 C 0.06 1.52 6.54 -82.25 -0.54 0.98 14 8 C 0.08 2.17 4.74 -29.03 -0.14 2.03 14 9 C -0.59 -16.77 9.09 -34.44 -0.31 -17.08 14 10 H 0.05 1.43 7.74 -52.49 -0.41 1.02 14 11 C 0.02 0.55 5.46 -17.82 -0.10 0.45 14 12 N -0.91 -27.23 13.65 55.43 0.76 -26.47 14 13 Si 1.07 25.25 29.90 -169.99 -5.08 20.16 14 14 H -0.29 -6.58 7.11 56.52 0.40 -6.18 14 15 H -0.29 -6.50 7.11 56.52 0.40 -6.10 14 16 H -0.28 -6.55 7.11 56.52 0.40 -6.15 14 17 H 0.07 1.23 8.14 -51.93 -0.42 0.81 14 18 H 0.06 0.91 8.14 -51.93 -0.42 0.48 14 19 H 0.08 1.34 7.50 -51.93 -0.39 0.95 14 20 H 0.03 0.75 8.01 -51.93 -0.42 0.33 14 21 H 0.03 0.86 7.36 -51.93 -0.38 0.47 14 22 H 0.27 7.95 7.22 -40.82 -0.29 7.66 14 LS Contribution 203.89 15.07 3.07 3.07 Total: -1.00 -32.19 203.89 -5.85 -38.04 By element: Atomic # 1 Polarization: 0.90 SS G_CDS: -4.58 Total: -3.68 kcal Atomic # 6 Polarization: -13.50 SS G_CDS: -1.32 Total: -14.82 kcal Atomic # 7 Polarization: -44.84 SS G_CDS: 2.06 Total: -42.78 kcal Atomic # 14 Polarization: 25.25 SS G_CDS: -5.08 Total: 20.16 kcal Total LS contribution 3.07 Total: 3.07 kcal Total: -32.19 -5.85 -38.04 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259469855.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.354 kcal (2) G-P(sol) polarization free energy of solvation -32.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds