Wall clock time and date at job start Mon Mar 30 2020 02:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86803 * 120.00322 * 2 1 4 4 H 1.48503 * 109.46849 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.47135 * 119.99467 * 3 2 1 6 6 H 1.48496 * 109.47423 * 239.99913 * 3 2 1 7 7 C 1.37875 * 120.00198 * 179.72285 * 2 1 3 8 8 H 1.08003 * 119.99679 * 345.30967 * 7 2 1 9 9 C 1.50698 * 120.00407 * 165.31379 * 7 2 1 10 10 H 1.08995 * 109.47490 * 54.57169 * 9 7 2 11 11 N 1.46900 * 109.47182 * 294.57174 * 9 7 2 12 12 C 1.50705 * 109.47427 * 174.57545 * 9 7 2 13 13 C 1.41374 * 128.01108 * 79.67336 * 12 9 7 14 14 N 1.30167 * 106.40004 * 179.89880 * 13 12 9 15 15 O 1.20927 * 111.60265 * 0.39478 * 14 13 12 16 16 C 1.34038 * 111.56384 * 359.74234 * 15 14 13 17 17 H 0.97004 * 120.00404 * 174.78881 * 1 2 3 18 18 H 1.00906 * 110.99871 * 293.78484 * 11 9 7 19 19 H 1.00896 * 110.99661 * 57.73616 * 11 9 7 20 20 H 1.08002 * 126.79978 * 0.03483 * 13 12 9 21 21 H 1.08008 * 126.77408 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1028 1.6964 1.2126 6 1 3.1029 1.6964 -1.2124 7 6 2.0045 -1.1940 0.0058 8 1 1.4909 -2.1129 0.2474 9 6 3.4745 -1.2170 -0.3250 10 1 4.0044 -0.5220 0.3263 11 7 3.6675 -0.8191 -1.7258 12 6 4.0141 -2.6090 -0.1193 13 6 3.9064 -3.7212 -0.9853 14 7 4.5221 -4.7059 -0.3973 15 8 4.9718 -4.3730 0.6748 16 6 4.7093 -3.0858 0.9409 17 1 -0.4851 -0.8366 -0.0763 18 1 3.2719 -1.5029 -2.3537 19 1 3.2806 0.0966 -1.8982 20 1 3.4131 -3.7480 -1.9457 21 1 4.9959 -2.5370 1.8259 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259592928.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:50 Heat of formation + Delta-G solvation = 56.518221 kcal Electronic energy + Delta-G solvation = -9390.020692 eV Core-core repulsion = 7462.249821 eV Total energy + Delta-G solvation = -1927.770871 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 168.064 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -44.24453 -35.69136 -32.74914 -31.64917 -30.58010 -26.09900 -23.22445 -21.87845 -19.94669 -17.81069 -17.23656 -16.82721 -15.19019 -14.17525 -13.75022 -13.09886 -12.87624 -12.27573 -11.86936 -11.44242 -10.86254 -10.27234 -10.13466 -9.64209 -9.41308 -8.81225 -8.61750 -7.63313 -6.59258 -4.34775 2.15686 3.04034 3.23663 3.31025 3.47742 3.90988 4.29993 4.95352 5.06956 5.46225 5.79851 5.88971 6.21584 6.28981 6.66644 7.02857 7.66992 8.09289 8.26428 8.38952 8.71378 8.84784 9.37909 10.71385 Molecular weight = 168.06amu Principal moments of inertia in cm(-1) A = 0.077525 B = 0.015337 C = 0.014788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 361.084819 B = 1825.227782 C = 1893.025883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.033 3.967 3 Si 1.045 2.955 4 H -0.283 1.283 5 H -0.281 1.281 6 H -0.271 1.271 7 C -0.630 4.630 8 H 0.057 0.943 9 C 0.245 3.755 10 H 0.049 0.951 11 N -0.856 5.856 12 C -0.131 4.131 13 C -0.003 4.003 14 N -0.385 5.385 15 O 0.082 5.918 16 C -0.094 4.094 17 H 0.270 0.730 18 H 0.324 0.676 19 H 0.334 0.666 20 H 0.181 0.819 21 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.236 -1.392 -0.033 7.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.174 4.174 3 Si 0.872 3.128 4 H -0.209 1.209 5 H -0.207 1.207 6 H -0.198 1.198 7 C -0.670 4.670 8 H 0.075 0.925 9 C 0.135 3.865 10 H 0.067 0.933 11 N -0.387 5.387 12 C -0.135 4.135 13 C -0.182 4.182 14 N -0.090 5.090 15 O 0.017 5.983 16 C -0.176 4.176 17 H 0.080 0.920 18 H 0.135 0.865 19 H 0.149 0.851 20 H 0.198 0.802 21 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 8.044 -1.068 -0.110 8.115 hybrid contribution -1.341 -0.843 -0.021 1.583 sum 6.703 -1.910 -0.131 6.971 Atomic orbital electron populations 1.70820 1.07001 1.30743 1.44297 1.25878 0.96237 1.02494 0.92743 0.84001 0.75339 0.75887 0.77560 1.20858 1.20666 1.19760 1.22614 0.93588 0.96618 1.54159 0.92523 1.17661 0.94764 0.86063 0.88006 0.93347 1.59771 1.65757 1.07158 1.06023 1.21686 0.99076 0.99149 0.93599 1.24785 1.01529 0.89261 1.02596 1.73733 1.14530 1.24712 0.96009 1.84678 1.58786 1.26212 1.28604 1.25574 1.04465 0.84838 1.02685 0.91966 0.86502 0.85070 0.80226 0.77390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.38 13.69 55.43 0.76 -25.62 14 2 C 0.03 0.91 5.38 -17.82 -0.10 0.81 14 3 Si 1.04 23.43 26.40 -169.99 -4.49 18.95 14 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 14 5 H -0.28 -6.04 7.11 56.52 0.40 -5.64 14 6 H -0.27 -5.53 5.69 56.52 0.32 -5.21 14 7 C -0.63 -16.88 9.06 -34.44 -0.31 -17.19 14 8 H 0.06 1.69 7.99 -52.48 -0.42 1.27 14 9 C 0.25 5.60 2.76 -70.01 -0.19 5.41 14 10 H 0.05 1.10 6.86 -51.93 -0.36 0.75 14 11 N -0.86 -18.17 9.22 -6.65 -0.06 -18.24 14 12 C -0.13 -2.74 5.21 -104.42 -0.54 -3.28 14 13 C 0.00 -0.07 11.56 -17.06 -0.20 -0.26 14 14 N -0.38 -7.63 12.07 30.35 0.37 -7.26 14 15 O 0.08 1.53 11.20 17.18 0.19 1.72 14 16 C -0.09 -1.70 12.26 29.74 0.36 -1.34 14 17 H 0.27 8.00 8.73 -40.82 -0.36 7.65 14 18 H 0.32 6.56 8.22 -39.29 -0.32 6.24 14 19 H 0.33 7.16 5.47 -39.29 -0.22 6.95 14 20 H 0.18 3.23 7.80 -52.49 -0.41 2.83 14 21 H 0.21 2.94 8.06 -52.48 -0.42 2.52 14 LS Contribution 191.84 15.07 2.89 2.89 Total: -1.00 -29.44 191.84 -2.70 -32.14 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -1.38 Total: 11.27 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: -0.98 Total: -15.86 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: 1.06 Total: -51.11 kcal Atomic # 8 Polarization: 1.53 SS G_CDS: 0.19 Total: 1.72 kcal Atomic # 14 Polarization: 23.43 SS G_CDS: -4.49 Total: 18.95 kcal Total LS contribution 2.89 Total: 2.89 kcal Total: -29.44 -2.70 -32.14 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259592928.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.658 kcal (2) G-P(sol) polarization free energy of solvation -29.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds